Genetic variation and relationships among spring camelina (Camelina sativa, Brassicaceae) accessions of different origin
Genetička varijabilnost i srodnost genotipova jarog lanika različitog porekla
Članak u časopisu (Objavljena verzija)
Metapodaci
Prikaz svih podataka o dokumentuApstrakt
Camelina sativa L. is one of the oldest crops of the Brassicaceae family, first domesticated in the region of south-eastern Europe. It has regained interest as a very promising alternative oilseed crop with broad adaptability, a wide range of tolerances to pests and diseases, and low-input requirements. The genetic diversity in spring camelina proved to be limited, so the identification and characterization of genetic variations in germplasm originating from different sources is considered very useful for development of efficient breeding programmes. The aim of the study was to use SSR markers in order to investigate genetic variation of twenty spring camelina accessions of different origin and estimate their genetic relatedness. Forty-five individual samples were taken from each accession and used for amplification of SSR markers P4C11, P6E4 and LIB19. Percentage of polymorphic loci, number of alleles, effective number of alleles, expected heterozygosity and Shannon’s information inde...x were used to estimate genetic variation. The accessions expressed different levels of genetic variation. The highest variability was found in cultivar Zavolzskij, breeding line CK2X-7, cultivar NS Zlatka and breeding line CK2X-9. The most uniform were cultivar Pernice, and population Maslomania. AMOVA (analysis of molecular variance) showed that 64% of the total genetic variation was attributed to variance within accessions and 36% to variance among them. IBased on genetic distance, accessions were divided in two clades, which both were further divided in two subclades. Genetic distance analysis indicated that there was overlapping in certain breeding programs and exchange of breeding germplasm.
Camelina sativa L., ili lanik, je jedna od najstarijih gajenih kupusnjača, koja je prvo bila domestifikovana na prostorima Jugoistočne Evrope. U poslednjih dvadeset godina, obnovljen je interes za ovu, skoro zaboravljenu biljnu vrstu, kao potencijalnu alternativnu uljanu kulturu. Razlozi za to su visok stepen adaptabilnosti, tolerantnost na mnoge štetočine i bolesti i nizak stepen potrebnih ulaganja za njeno gajenje. Genetička varijabilnost jarog lanika je relativno ograničena, tako da se njeno ispitivanje smatra izuzetno važnim za razvoj efikasnih programa oplemenjivanja ove kulture. Cilj istraživanja je bio ispitivanje genetičke varijabilnosti i srodnosti dvadeset genotipova jarog lanika, pomoću mikrosatelitskih (SSR) markera. Od svakog genotipa uzeto je 45 individualnih uzoraka, koji su korišćeni za amplifikaciju SSR prajmerima P4C11, P6E4 i LIB19. Ispitivani genotipovi su ispoljili različite stepene genetičke varijabilnosti, a AMOV (analiza molekularne varijanse) je ukazala da je 6...4% od ukupne genetičke varijabilnosti pripadalo varijabilnosti unutar genotipova. Analizom genetičke distance se može videti da je došlo do preklapanja različitih programa oplemenjivanja, kao i da je dolazilo do razmene germplazme između njih.
Ključne reči:
accessions / breeding / camelina / genetic variation / spring camelina / SSR markers / genetička varijabilnost / genotipovi / jari lanik / lanik / oplemenjivanje / SSR markeriIzvor:
Ratarstvo i povrtarstvo / Field and Vegetable Crops Research, 2022, 59, 3, 86-90Izdavač:
- Novi Sad : Institute of Field and Vegetable Crops
Finansiranje / projekti:
- APV 142-451-2609/2021-01/02: Potencijal ulja od lanika i šafranike kao funkcionalnog dodatka u hrani za kućne ljubimce, financed by the Provincial Secretariat for Higher Education and Scientific Research, AP Vojvodina
- Ministarstvo nauke, tehnološkog razvoja i inovacija Republike Srbije, institucionalno finansiranje - 200032 (Naučni institut za ratarstvo i povrtarstvo, Novi Sad) (RS-MESTD-inst-2020-200032)
DOI: 10.5937/ratpov59-38897
ISSN: 2217-8392; 1821-3944
Scopus: 2-s2.0-85146035802
Kolekcije
Institucija/grupa
FiVeRTY - JOUR AU - Nagl, Nevena AU - Kuzmanović, Boris AU - Zanetti, Federica AU - Vollmann, Johann AU - Marjanović-Jeromela, Ana PY - 2022 UR - http://fiver.ifvcns.rs/handle/123456789/3348 AB - Camelina sativa L. is one of the oldest crops of the Brassicaceae family, first domesticated in the region of south-eastern Europe. It has regained interest as a very promising alternative oilseed crop with broad adaptability, a wide range of tolerances to pests and diseases, and low-input requirements. The genetic diversity in spring camelina proved to be limited, so the identification and characterization of genetic variations in germplasm originating from different sources is considered very useful for development of efficient breeding programmes. The aim of the study was to use SSR markers in order to investigate genetic variation of twenty spring camelina accessions of different origin and estimate their genetic relatedness. Forty-five individual samples were taken from each accession and used for amplification of SSR markers P4C11, P6E4 and LIB19. Percentage of polymorphic loci, number of alleles, effective number of alleles, expected heterozygosity and Shannon’s information index were used to estimate genetic variation. The accessions expressed different levels of genetic variation. The highest variability was found in cultivar Zavolzskij, breeding line CK2X-7, cultivar NS Zlatka and breeding line CK2X-9. The most uniform were cultivar Pernice, and population Maslomania. AMOVA (analysis of molecular variance) showed that 64% of the total genetic variation was attributed to variance within accessions and 36% to variance among them. IBased on genetic distance, accessions were divided in two clades, which both were further divided in two subclades. Genetic distance analysis indicated that there was overlapping in certain breeding programs and exchange of breeding germplasm. AB - Camelina sativa L., ili lanik, je jedna od najstarijih gajenih kupusnjača, koja je prvo bila domestifikovana na prostorima Jugoistočne Evrope. U poslednjih dvadeset godina, obnovljen je interes za ovu, skoro zaboravljenu biljnu vrstu, kao potencijalnu alternativnu uljanu kulturu. Razlozi za to su visok stepen adaptabilnosti, tolerantnost na mnoge štetočine i bolesti i nizak stepen potrebnih ulaganja za njeno gajenje. Genetička varijabilnost jarog lanika je relativno ograničena, tako da se njeno ispitivanje smatra izuzetno važnim za razvoj efikasnih programa oplemenjivanja ove kulture. Cilj istraživanja je bio ispitivanje genetičke varijabilnosti i srodnosti dvadeset genotipova jarog lanika, pomoću mikrosatelitskih (SSR) markera. Od svakog genotipa uzeto je 45 individualnih uzoraka, koji su korišćeni za amplifikaciju SSR prajmerima P4C11, P6E4 i LIB19. Ispitivani genotipovi su ispoljili različite stepene genetičke varijabilnosti, a AMOV (analiza molekularne varijanse) je ukazala da je 64% od ukupne genetičke varijabilnosti pripadalo varijabilnosti unutar genotipova. Analizom genetičke distance se može videti da je došlo do preklapanja različitih programa oplemenjivanja, kao i da je dolazilo do razmene germplazme između njih. PB - Novi Sad : Institute of Field and Vegetable Crops T2 - Ratarstvo i povrtarstvo / Field and Vegetable Crops Research T1 - Genetic variation and relationships among spring camelina (Camelina sativa, Brassicaceae) accessions of different origin T1 - Genetička varijabilnost i srodnost genotipova jarog lanika različitog porekla EP - 90 IS - 3 SP - 86 VL - 59 DO - 10.5937/ratpov59-38897 ER -
@article{ author = "Nagl, Nevena and Kuzmanović, Boris and Zanetti, Federica and Vollmann, Johann and Marjanović-Jeromela, Ana", year = "2022", abstract = "Camelina sativa L. is one of the oldest crops of the Brassicaceae family, first domesticated in the region of south-eastern Europe. It has regained interest as a very promising alternative oilseed crop with broad adaptability, a wide range of tolerances to pests and diseases, and low-input requirements. The genetic diversity in spring camelina proved to be limited, so the identification and characterization of genetic variations in germplasm originating from different sources is considered very useful for development of efficient breeding programmes. The aim of the study was to use SSR markers in order to investigate genetic variation of twenty spring camelina accessions of different origin and estimate their genetic relatedness. Forty-five individual samples were taken from each accession and used for amplification of SSR markers P4C11, P6E4 and LIB19. Percentage of polymorphic loci, number of alleles, effective number of alleles, expected heterozygosity and Shannon’s information index were used to estimate genetic variation. The accessions expressed different levels of genetic variation. The highest variability was found in cultivar Zavolzskij, breeding line CK2X-7, cultivar NS Zlatka and breeding line CK2X-9. The most uniform were cultivar Pernice, and population Maslomania. AMOVA (analysis of molecular variance) showed that 64% of the total genetic variation was attributed to variance within accessions and 36% to variance among them. IBased on genetic distance, accessions were divided in two clades, which both were further divided in two subclades. Genetic distance analysis indicated that there was overlapping in certain breeding programs and exchange of breeding germplasm., Camelina sativa L., ili lanik, je jedna od najstarijih gajenih kupusnjača, koja je prvo bila domestifikovana na prostorima Jugoistočne Evrope. U poslednjih dvadeset godina, obnovljen je interes za ovu, skoro zaboravljenu biljnu vrstu, kao potencijalnu alternativnu uljanu kulturu. Razlozi za to su visok stepen adaptabilnosti, tolerantnost na mnoge štetočine i bolesti i nizak stepen potrebnih ulaganja za njeno gajenje. Genetička varijabilnost jarog lanika je relativno ograničena, tako da se njeno ispitivanje smatra izuzetno važnim za razvoj efikasnih programa oplemenjivanja ove kulture. Cilj istraživanja je bio ispitivanje genetičke varijabilnosti i srodnosti dvadeset genotipova jarog lanika, pomoću mikrosatelitskih (SSR) markera. Od svakog genotipa uzeto je 45 individualnih uzoraka, koji su korišćeni za amplifikaciju SSR prajmerima P4C11, P6E4 i LIB19. Ispitivani genotipovi su ispoljili različite stepene genetičke varijabilnosti, a AMOV (analiza molekularne varijanse) je ukazala da je 64% od ukupne genetičke varijabilnosti pripadalo varijabilnosti unutar genotipova. Analizom genetičke distance se može videti da je došlo do preklapanja različitih programa oplemenjivanja, kao i da je dolazilo do razmene germplazme između njih.", publisher = "Novi Sad : Institute of Field and Vegetable Crops", journal = "Ratarstvo i povrtarstvo / Field and Vegetable Crops Research", title = "Genetic variation and relationships among spring camelina (Camelina sativa, Brassicaceae) accessions of different origin, Genetička varijabilnost i srodnost genotipova jarog lanika različitog porekla", pages = "90-86", number = "3", volume = "59", doi = "10.5937/ratpov59-38897" }
Nagl, N., Kuzmanović, B., Zanetti, F., Vollmann, J.,& Marjanović-Jeromela, A.. (2022). Genetic variation and relationships among spring camelina (Camelina sativa, Brassicaceae) accessions of different origin. in Ratarstvo i povrtarstvo / Field and Vegetable Crops Research Novi Sad : Institute of Field and Vegetable Crops., 59(3), 86-90. https://doi.org/10.5937/ratpov59-38897
Nagl N, Kuzmanović B, Zanetti F, Vollmann J, Marjanović-Jeromela A. Genetic variation and relationships among spring camelina (Camelina sativa, Brassicaceae) accessions of different origin. in Ratarstvo i povrtarstvo / Field and Vegetable Crops Research. 2022;59(3):86-90. doi:10.5937/ratpov59-38897 .
Nagl, Nevena, Kuzmanović, Boris, Zanetti, Federica, Vollmann, Johann, Marjanović-Jeromela, Ana, "Genetic variation and relationships among spring camelina (Camelina sativa, Brassicaceae) accessions of different origin" in Ratarstvo i povrtarstvo / Field and Vegetable Crops Research, 59, no. 3 (2022):86-90, https://doi.org/10.5937/ratpov59-38897 . .