Popović Milovanović, Tatjana

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The Effect of Biotic Stress in Plant Species Induced by ‘Candidatus Phytoplasma solani’—An Artificial Neural Network Approach

Đalović, Ivica; Mitrović, Petar; Trivan, Goran; Jelušić, Aleksandra; Pezo, Lato; Janić Hajnal, Elizabet; Popović Milovanović, Tatjana

(Basel : MDPI, 2024)

TY  - JOUR
AU  - Đalović, Ivica
AU  - Mitrović, Petar
AU  - Trivan, Goran
AU  - Jelušić, Aleksandra
AU  - Pezo, Lato
AU  - Janić Hajnal, Elizabet
AU  - Popović Milovanović, Tatjana
PY  - 2024
UR  - http://fiver.ifvcns.rs/handle/123456789/4548
AB  - Infections with phytoplasma present one of the most significant biotic stresses influencing plant health, growth, and production. The phytoplasma ‘Candidatus Phytoplasma solani’ infects a variety of plant species. This pathogen impacts the physiological and morphological characteristics of plants causing stunting, yellowing, leaf curling, and other symptoms that can lead to significant economic losses. The aim of this study was to determine biochemical changes in peony (Paeonia tenuifolia L.), mint (Mentha × piperita L.), and dill (Anethum graveolens L.) induced by ‘Ca. Phytoplasma solani’ in Serbia as well as to predict the impact of the biotic stress using artificial neural network (ANN) modeling. The phylogenetic position of the Serbian ‘Ca. Phytoplasma solani’ strains originated from the tested hosts using 16S rRNA (peony and carrot strains) and plsC (mint and dill strains) sequences indicated by their genetic homogeneity despite the host of origin. Biochemical parameters significantly differed in asymptomatic and symptomatic plants, except for total anthocyanidins contents in dill and the capacity of peony and mint extracts to neutralize superoxide anions and hydroxyl radicals, respectively. Principal Component Analysis (PCA) showed a correlation between different chemical parameters and revealed a clear separation among the samples. Based on the ANN performance, the optimal number of hidden neurons for the calculation of TS, RG, PAL, LP, NBT, •OH, TP, TT, Tflav, Tpro, Tant, DPPH, and Car was nine (using MLP 8-9-13), as it produced high r2 values (1.000 during the training period) and low SOS values. Developing an effective early warning system for the detection of plant diseases in different plant species is critical for improving crop yield and quality.
PB  - Basel : MDPI
T2  - Horticulturae
T1  - The Effect of Biotic Stress in Plant Species Induced by ‘Candidatus Phytoplasma solani’—An Artificial Neural Network Approach
IS  - 5
SP  - 426
VL  - 10
DO  - 10.3390/horticulturae10050426
ER  - 
@article{
author = "Đalović, Ivica and Mitrović, Petar and Trivan, Goran and Jelušić, Aleksandra and Pezo, Lato and Janić Hajnal, Elizabet and Popović Milovanović, Tatjana",
year = "2024",
abstract = "Infections with phytoplasma present one of the most significant biotic stresses influencing plant health, growth, and production. The phytoplasma ‘Candidatus Phytoplasma solani’ infects a variety of plant species. This pathogen impacts the physiological and morphological characteristics of plants causing stunting, yellowing, leaf curling, and other symptoms that can lead to significant economic losses. The aim of this study was to determine biochemical changes in peony (Paeonia tenuifolia L.), mint (Mentha × piperita L.), and dill (Anethum graveolens L.) induced by ‘Ca. Phytoplasma solani’ in Serbia as well as to predict the impact of the biotic stress using artificial neural network (ANN) modeling. The phylogenetic position of the Serbian ‘Ca. Phytoplasma solani’ strains originated from the tested hosts using 16S rRNA (peony and carrot strains) and plsC (mint and dill strains) sequences indicated by their genetic homogeneity despite the host of origin. Biochemical parameters significantly differed in asymptomatic and symptomatic plants, except for total anthocyanidins contents in dill and the capacity of peony and mint extracts to neutralize superoxide anions and hydroxyl radicals, respectively. Principal Component Analysis (PCA) showed a correlation between different chemical parameters and revealed a clear separation among the samples. Based on the ANN performance, the optimal number of hidden neurons for the calculation of TS, RG, PAL, LP, NBT, •OH, TP, TT, Tflav, Tpro, Tant, DPPH, and Car was nine (using MLP 8-9-13), as it produced high r2 values (1.000 during the training period) and low SOS values. Developing an effective early warning system for the detection of plant diseases in different plant species is critical for improving crop yield and quality.",
publisher = "Basel : MDPI",
journal = "Horticulturae",
title = "The Effect of Biotic Stress in Plant Species Induced by ‘Candidatus Phytoplasma solani’—An Artificial Neural Network Approach",
number = "5",
pages = "426",
volume = "10",
doi = "10.3390/horticulturae10050426"
}
Đalović, I., Mitrović, P., Trivan, G., Jelušić, A., Pezo, L., Janić Hajnal, E.,& Popović Milovanović, T.. (2024). The Effect of Biotic Stress in Plant Species Induced by ‘Candidatus Phytoplasma solani’—An Artificial Neural Network Approach. in Horticulturae
Basel : MDPI., 10(5), 426.
https://doi.org/10.3390/horticulturae10050426
Đalović I, Mitrović P, Trivan G, Jelušić A, Pezo L, Janić Hajnal E, Popović Milovanović T. The Effect of Biotic Stress in Plant Species Induced by ‘Candidatus Phytoplasma solani’—An Artificial Neural Network Approach. in Horticulturae. 2024;10(5):426.
doi:10.3390/horticulturae10050426 .
Đalović, Ivica, Mitrović, Petar, Trivan, Goran, Jelušić, Aleksandra, Pezo, Lato, Janić Hajnal, Elizabet, Popović Milovanović, Tatjana, "The Effect of Biotic Stress in Plant Species Induced by ‘Candidatus Phytoplasma solani’—An Artificial Neural Network Approach" in Horticulturae, 10, no. 5 (2024):426,
https://doi.org/10.3390/horticulturae10050426 . .

Proučavanje prouzrokovača vlažne truleži paprike i mrkve u Vojvodini

Popović Milovanović, Tatjana; Iličić, Renata; Jelušić, Aleksandra; Mitrović, Petar; Trkulja, Vojislav; Milovanović, Predrag; Zečević, Katarina

(Beograd : Društvo za zaštitu bilja Srbije, 2023)

TY  - CONF
AU  - Popović Milovanović, Tatjana
AU  - Iličić, Renata
AU  - Jelušić, Aleksandra
AU  - Mitrović, Petar
AU  - Trkulja, Vojislav
AU  - Milovanović, Predrag
AU  - Zečević, Katarina
PY  - 2023
UR  - http://fiver.ifvcns.rs/handle/123456789/4178
AB  - Veliki ekonomski značaj u gajenju brojnih biljnih vrsta, a posebno korenasto-krtolastih, imaju bakterije iz rodova Pectobacterium i Dickeya, prvobitno opisane kao rod Erwinia. Ove bakterije prouzrokuju bolest tzv. vlažnu trulež. Štete nastaju usled propadanja zaraženih plodova, krtola i mesnatog korena. Iako ovi patogeni mogu da prouzrokuju velike štete tokom proizvodnje, ipak najveće nastaju tokom skladištenja. Primenom metode sekvenciranja DNK genoma, taksonomija rodova Pectobacterium i Dickeya je u prethodnoj deceniji značajno izmenjena,usled čega je i pripadnost pojedinih, već opisanih sojeva vrstama iz ovih rodova iznova determinisana. Takođe, ova metodologija doprinela je otkrivanju velikog broja novih vrsta bakterija ovih rodova. Tako, rod Pectobacterium do danas broji 20 vrsta, a rod Dickeya najmanje 10. S obzirom na učestale taksonomske promene, cilj ovog rada je bio da se izoluju i identifikuju prouzrokovači vlažne truleži paprike i mrkve kako bi se utvrdio genetički diverzitet novoizolovanih bakterijskih populacija.
PB  - Beograd : Društvo za zaštitu bilja Srbije
C3  - Zbornik rezimea radova, 17. Simpozijum o zaštiti bilja, Zlatibor, 27-30. novembar 2023.
T1  - Proučavanje prouzrokovača vlažne truleži paprike i mrkve u Vojvodini
EP  - 48
SP  - 48
UR  - https://hdl.handle.net/21.15107/rcub_fiver_4178
ER  - 
@conference{
author = "Popović Milovanović, Tatjana and Iličić, Renata and Jelušić, Aleksandra and Mitrović, Petar and Trkulja, Vojislav and Milovanović, Predrag and Zečević, Katarina",
year = "2023",
abstract = "Veliki ekonomski značaj u gajenju brojnih biljnih vrsta, a posebno korenasto-krtolastih, imaju bakterije iz rodova Pectobacterium i Dickeya, prvobitno opisane kao rod Erwinia. Ove bakterije prouzrokuju bolest tzv. vlažnu trulež. Štete nastaju usled propadanja zaraženih plodova, krtola i mesnatog korena. Iako ovi patogeni mogu da prouzrokuju velike štete tokom proizvodnje, ipak najveće nastaju tokom skladištenja. Primenom metode sekvenciranja DNK genoma, taksonomija rodova Pectobacterium i Dickeya je u prethodnoj deceniji značajno izmenjena,usled čega je i pripadnost pojedinih, već opisanih sojeva vrstama iz ovih rodova iznova determinisana. Takođe, ova metodologija doprinela je otkrivanju velikog broja novih vrsta bakterija ovih rodova. Tako, rod Pectobacterium do danas broji 20 vrsta, a rod Dickeya najmanje 10. S obzirom na učestale taksonomske promene, cilj ovog rada je bio da se izoluju i identifikuju prouzrokovači vlažne truleži paprike i mrkve kako bi se utvrdio genetički diverzitet novoizolovanih bakterijskih populacija.",
publisher = "Beograd : Društvo za zaštitu bilja Srbije",
journal = "Zbornik rezimea radova, 17. Simpozijum o zaštiti bilja, Zlatibor, 27-30. novembar 2023.",
title = "Proučavanje prouzrokovača vlažne truleži paprike i mrkve u Vojvodini",
pages = "48-48",
url = "https://hdl.handle.net/21.15107/rcub_fiver_4178"
}
Popović Milovanović, T., Iličić, R., Jelušić, A., Mitrović, P., Trkulja, V., Milovanović, P.,& Zečević, K.. (2023). Proučavanje prouzrokovača vlažne truleži paprike i mrkve u Vojvodini. in Zbornik rezimea radova, 17. Simpozijum o zaštiti bilja, Zlatibor, 27-30. novembar 2023.
Beograd : Društvo za zaštitu bilja Srbije., 48-48.
https://hdl.handle.net/21.15107/rcub_fiver_4178
Popović Milovanović T, Iličić R, Jelušić A, Mitrović P, Trkulja V, Milovanović P, Zečević K. Proučavanje prouzrokovača vlažne truleži paprike i mrkve u Vojvodini. in Zbornik rezimea radova, 17. Simpozijum o zaštiti bilja, Zlatibor, 27-30. novembar 2023.. 2023;:48-48.
https://hdl.handle.net/21.15107/rcub_fiver_4178 .
Popović Milovanović, Tatjana, Iličić, Renata, Jelušić, Aleksandra, Mitrović, Petar, Trkulja, Vojislav, Milovanović, Predrag, Zečević, Katarina, "Proučavanje prouzrokovača vlažne truleži paprike i mrkve u Vojvodini" in Zbornik rezimea radova, 17. Simpozijum o zaštiti bilja, Zlatibor, 27-30. novembar 2023. (2023):48-48,
https://hdl.handle.net/21.15107/rcub_fiver_4178 .

Proučavanje populacija Xanthomonas campestris pv. campestris poreklom sa kupusa u Vojvodini

Jelušić, Aleksandra; Popović Milovanović, Tatjana; Mitrović, Petar; Iličić, Renata

(Beograd : Društvo za zaštitu bilja Srbije, 2023)

TY  - CONF
AU  - Jelušić, Aleksandra
AU  - Popović Milovanović, Tatjana
AU  - Mitrović, Petar
AU  - Iličić, Renata
PY  - 2023
UR  - http://fiver.ifvcns.rs/handle/123456789/4179
AB  - Bakterija Xanthomonas campestris pv. campestris (Xcc) je sveprisutna kao prouzrokovač crne truleži biljaka iz familije kupusnjača, pre svega kupusa, a zatim i karfiola, brokolija, kelja, prokelja, kelerabe, raštana, ali i uljane repice, slačice, rotkvice, hrena, kres salate, određenih sorti model biljke Arabidopsis thaliana i nekih korovskih vrsta i ukrasnih biljaka. Negativnim uticajem na rast i razvoj domaćina, a time i veličinu i kvalitet prinosa, dovodi do značajnih ekonomskih gubitaka. Beležene štete izazvane ovim patogenom procenjuju se na više od 50% na kupusu, odnosno 50 – 70% na karfiolu. U Srbiji se Xcc nakon prve pojave na kelju 1960-ih, redovno javlja na svim gajenim kupusnjačama. S obzirom na obim i tradiciju gajenja različitih kupusnjača, ova bakterija je najznačajniji patogen kupusa. Dosadašnje genetičke analize prisutnih populacija Xcc poreklom sa kupusa u Srbiji nisu ukazale na postojanje diverziteta, bez obzira na sortu, godinu ili lokalitet sa kog su izolovane. Cilj ovog rada je da se izoluju i genetički okarakterišu novije populacije bakterije Xcc poreklom sa kupusa.
PB  - Beograd : Društvo za zaštitu bilja Srbije
C3  - Zbornik rezimea radova, 17. Simpozijum o zaštiti bilja, Zlatibor, 27-30. novembar 2023.
T1  - Proučavanje populacija Xanthomonas campestris pv. campestris poreklom sa kupusa u Vojvodini
EP  - 47
SP  - 47
UR  - https://hdl.handle.net/21.15107/rcub_fiver_4179
ER  - 
@conference{
author = "Jelušić, Aleksandra and Popović Milovanović, Tatjana and Mitrović, Petar and Iličić, Renata",
year = "2023",
abstract = "Bakterija Xanthomonas campestris pv. campestris (Xcc) je sveprisutna kao prouzrokovač crne truleži biljaka iz familije kupusnjača, pre svega kupusa, a zatim i karfiola, brokolija, kelja, prokelja, kelerabe, raštana, ali i uljane repice, slačice, rotkvice, hrena, kres salate, određenih sorti model biljke Arabidopsis thaliana i nekih korovskih vrsta i ukrasnih biljaka. Negativnim uticajem na rast i razvoj domaćina, a time i veličinu i kvalitet prinosa, dovodi do značajnih ekonomskih gubitaka. Beležene štete izazvane ovim patogenom procenjuju se na više od 50% na kupusu, odnosno 50 – 70% na karfiolu. U Srbiji se Xcc nakon prve pojave na kelju 1960-ih, redovno javlja na svim gajenim kupusnjačama. S obzirom na obim i tradiciju gajenja različitih kupusnjača, ova bakterija je najznačajniji patogen kupusa. Dosadašnje genetičke analize prisutnih populacija Xcc poreklom sa kupusa u Srbiji nisu ukazale na postojanje diverziteta, bez obzira na sortu, godinu ili lokalitet sa kog su izolovane. Cilj ovog rada je da se izoluju i genetički okarakterišu novije populacije bakterije Xcc poreklom sa kupusa.",
publisher = "Beograd : Društvo za zaštitu bilja Srbije",
journal = "Zbornik rezimea radova, 17. Simpozijum o zaštiti bilja, Zlatibor, 27-30. novembar 2023.",
title = "Proučavanje populacija Xanthomonas campestris pv. campestris poreklom sa kupusa u Vojvodini",
pages = "47-47",
url = "https://hdl.handle.net/21.15107/rcub_fiver_4179"
}
Jelušić, A., Popović Milovanović, T., Mitrović, P.,& Iličić, R.. (2023). Proučavanje populacija Xanthomonas campestris pv. campestris poreklom sa kupusa u Vojvodini. in Zbornik rezimea radova, 17. Simpozijum o zaštiti bilja, Zlatibor, 27-30. novembar 2023.
Beograd : Društvo za zaštitu bilja Srbije., 47-47.
https://hdl.handle.net/21.15107/rcub_fiver_4179
Jelušić A, Popović Milovanović T, Mitrović P, Iličić R. Proučavanje populacija Xanthomonas campestris pv. campestris poreklom sa kupusa u Vojvodini. in Zbornik rezimea radova, 17. Simpozijum o zaštiti bilja, Zlatibor, 27-30. novembar 2023.. 2023;:47-47.
https://hdl.handle.net/21.15107/rcub_fiver_4179 .
Jelušić, Aleksandra, Popović Milovanović, Tatjana, Mitrović, Petar, Iličić, Renata, "Proučavanje populacija Xanthomonas campestris pv. campestris poreklom sa kupusa u Vojvodini" in Zbornik rezimea radova, 17. Simpozijum o zaštiti bilja, Zlatibor, 27-30. novembar 2023. (2023):47-47,
https://hdl.handle.net/21.15107/rcub_fiver_4179 .

Diversity of bacterial soft rot-causing Pectobacterium species affecting cabbage in Serbia

Jelušić, Aleksandra; Mitrović, Petar; Marković, Sanja; Iličić, Renata; Milovanović, Predrag; Stanković, Slaviša; Popović Milovanović, Tatjana

(Basel : MDPI, 2023)

TY  - JOUR
AU  - Jelušić, Aleksandra
AU  - Mitrović, Petar
AU  - Marković, Sanja
AU  - Iličić, Renata
AU  - Milovanović, Predrag
AU  - Stanković, Slaviša
AU  - Popović Milovanović, Tatjana
PY  - 2023
UR  - http://fiver.ifvcns.rs/handle/123456789/3286
AB  - The aim of this work was to identify and characterize the pectolytic bacteria responsible for the emergence of bacterial soft rot on two summer cabbage hybrids (Cheers F1 and Hippo F1) grown in the Futog locality (Baˇcka, Vojvodina), known for the five-century-long tradition of cabbage cultivation in Serbia. Symptoms manifesting as soft lesions on outer head leaves were observed during August 2021, while the inner tissues were macerated, featuring cream to black discoloration. As the affected tissue decomposed, it exuded a specific odor. Disease incidence ranged from 15% to 25%. A total of 67 isolates producing pits on crystal violet pectate (CVP) medium were characterized for their phenotypic and genotypic features. The pathogenicity was confirmed on cabbage heads. Findings yielded by the repetitive element palindromic-polymerase chain reaction (rep-PCR) technique confirmed interspecies diversity between cabbage isolates, as well as intraspecies genetic diversity within the P. carotovorum group of isolates. Based on multilocus sequence typing (MLST) using genes dnaX, mdh, icdA, and proA, five representative isolates were identified as Pectobacterium carotovorum (Cheers F1 and Hippo F1), while two were identified as Pectobacterium versatile (Hippo F1) and Pectobacterium odoriferum (Hippo F1), respectively, indicating the presence of diverse Pectobacterium species even in combined infection in the same field. Among the obtained isolates, P. carotovorum was the most prevalent species (62.69%), while P. versatile and P. odoriferum were less represented (contributing by 19.40% and 17.91%, respectively). Multilocus sequence analysis (MLSA) performed with concatenated sequences of four housekeeping genes (proA, dnaX, icdA, and mdh) and constructed a neighbor-joining phylogenetic tree enabled insight into the phylogenetic position of the Serbian cabbage Pectobacterium isolates. Bacterium P. odoriferum was found to be the most virulent species for cabbage, followed by P. versatile, while all three species had comparable virulence with respect to potato. The results obtained in this work provide a better understanding of the spreading routes and abundance of different Pectobacterium spp. in Serbia.
PB  - Basel : MDPI
T2  - Microorganisms - Basel
T1  - Diversity of bacterial soft rot-causing Pectobacterium species affecting cabbage in Serbia
IS  - 2
SP  - 335
VL  - 11
DO  - 10.3390/microorganisms11020335
ER  - 
@article{
author = "Jelušić, Aleksandra and Mitrović, Petar and Marković, Sanja and Iličić, Renata and Milovanović, Predrag and Stanković, Slaviša and Popović Milovanović, Tatjana",
year = "2023",
abstract = "The aim of this work was to identify and characterize the pectolytic bacteria responsible for the emergence of bacterial soft rot on two summer cabbage hybrids (Cheers F1 and Hippo F1) grown in the Futog locality (Baˇcka, Vojvodina), known for the five-century-long tradition of cabbage cultivation in Serbia. Symptoms manifesting as soft lesions on outer head leaves were observed during August 2021, while the inner tissues were macerated, featuring cream to black discoloration. As the affected tissue decomposed, it exuded a specific odor. Disease incidence ranged from 15% to 25%. A total of 67 isolates producing pits on crystal violet pectate (CVP) medium were characterized for their phenotypic and genotypic features. The pathogenicity was confirmed on cabbage heads. Findings yielded by the repetitive element palindromic-polymerase chain reaction (rep-PCR) technique confirmed interspecies diversity between cabbage isolates, as well as intraspecies genetic diversity within the P. carotovorum group of isolates. Based on multilocus sequence typing (MLST) using genes dnaX, mdh, icdA, and proA, five representative isolates were identified as Pectobacterium carotovorum (Cheers F1 and Hippo F1), while two were identified as Pectobacterium versatile (Hippo F1) and Pectobacterium odoriferum (Hippo F1), respectively, indicating the presence of diverse Pectobacterium species even in combined infection in the same field. Among the obtained isolates, P. carotovorum was the most prevalent species (62.69%), while P. versatile and P. odoriferum were less represented (contributing by 19.40% and 17.91%, respectively). Multilocus sequence analysis (MLSA) performed with concatenated sequences of four housekeeping genes (proA, dnaX, icdA, and mdh) and constructed a neighbor-joining phylogenetic tree enabled insight into the phylogenetic position of the Serbian cabbage Pectobacterium isolates. Bacterium P. odoriferum was found to be the most virulent species for cabbage, followed by P. versatile, while all three species had comparable virulence with respect to potato. The results obtained in this work provide a better understanding of the spreading routes and abundance of different Pectobacterium spp. in Serbia.",
publisher = "Basel : MDPI",
journal = "Microorganisms - Basel",
title = "Diversity of bacterial soft rot-causing Pectobacterium species affecting cabbage in Serbia",
number = "2",
pages = "335",
volume = "11",
doi = "10.3390/microorganisms11020335"
}
Jelušić, A., Mitrović, P., Marković, S., Iličić, R., Milovanović, P., Stanković, S.,& Popović Milovanović, T.. (2023). Diversity of bacterial soft rot-causing Pectobacterium species affecting cabbage in Serbia. in Microorganisms - Basel
Basel : MDPI., 11(2), 335.
https://doi.org/10.3390/microorganisms11020335
Jelušić A, Mitrović P, Marković S, Iličić R, Milovanović P, Stanković S, Popović Milovanović T. Diversity of bacterial soft rot-causing Pectobacterium species affecting cabbage in Serbia. in Microorganisms - Basel. 2023;11(2):335.
doi:10.3390/microorganisms11020335 .
Jelušić, Aleksandra, Mitrović, Petar, Marković, Sanja, Iličić, Renata, Milovanović, Predrag, Stanković, Slaviša, Popović Milovanović, Tatjana, "Diversity of bacterial soft rot-causing Pectobacterium species affecting cabbage in Serbia" in Microorganisms - Basel, 11, no. 2 (2023):335,
https://doi.org/10.3390/microorganisms11020335 . .
5
2

Phylogeographic Analysis of Soft-Rot-Causing Pectobacterium spp. Strains Obtained from Cabbage in Serbia

Jelušić, Aleksandra; Scortichini, Marco; Marković, Sanja; Mitrović, Petar; Iličić, Renata; Stanković, Slaviša; Popović Milovanović, Tatjana

(Basel : MDPI, 2023)

TY  - JOUR
AU  - Jelušić, Aleksandra
AU  - Scortichini, Marco
AU  - Marković, Sanja
AU  - Mitrović, Petar
AU  - Iličić, Renata
AU  - Stanković, Slaviša
AU  - Popović Milovanović, Tatjana
PY  - 2023
UR  - http://fiver.ifvcns.rs/handle/123456789/3737
AB  - The aim of this study was to establish a link between genetic diversity and the geographic origin of Pectobacterium strains belonging to three species—P. carotovorum, P. versatile, and P. odoriferum—isolated from cabbage in Serbia by comparing their sequences with those of strains sourced from different hosts and countries in Europe, Asia, and North America. Phylogeographic relatedness was reconstructed using the Templeton, Crandall, and Sing’s (TCS) haplotype network based on concatenated sequences of the housekeeping genes dnaX, icdA, mdh, and proA, while pairwise genetic distances were computed by applying the p-distance model. The obtained TCS haplotype networks indicated the existence of high intra-species genetic diversity among strains of all three species, as reflected in the 0.2–2.3%, 0.2–2.5%, and 0.1–1.7% genetic distance ranges obtained for P. carotovorum, P. versatile, and P. odoriferum, respectively. Five new haplotypes (denoted as HPc1–HPc5) were detected among cabbage strains of P. carotovorum, while one new haplotype was identified for both P. versatile (HPv1) and P. odoriferum (HPo1). None of the TCS haplotype networks provided evidence of significant correlation between geographic origin and the determined haplotypes, i.e., the infection origin. However, as haplotype network results are affected by the availability of sequencing data in public databases for the used genes and the number of analyzed strains, these findings may also be influenced by small sample size.
PB  - Basel : MDPI
T2  - Microorganisms - Basel
T1  - Phylogeographic Analysis of Soft-Rot-Causing Pectobacterium spp. Strains Obtained from Cabbage in Serbia
IS  - 8
SP  - 2122
VL  - 11
DO  - 10.3390/microorganisms11082122
ER  - 
@article{
author = "Jelušić, Aleksandra and Scortichini, Marco and Marković, Sanja and Mitrović, Petar and Iličić, Renata and Stanković, Slaviša and Popović Milovanović, Tatjana",
year = "2023",
abstract = "The aim of this study was to establish a link between genetic diversity and the geographic origin of Pectobacterium strains belonging to three species—P. carotovorum, P. versatile, and P. odoriferum—isolated from cabbage in Serbia by comparing their sequences with those of strains sourced from different hosts and countries in Europe, Asia, and North America. Phylogeographic relatedness was reconstructed using the Templeton, Crandall, and Sing’s (TCS) haplotype network based on concatenated sequences of the housekeeping genes dnaX, icdA, mdh, and proA, while pairwise genetic distances were computed by applying the p-distance model. The obtained TCS haplotype networks indicated the existence of high intra-species genetic diversity among strains of all three species, as reflected in the 0.2–2.3%, 0.2–2.5%, and 0.1–1.7% genetic distance ranges obtained for P. carotovorum, P. versatile, and P. odoriferum, respectively. Five new haplotypes (denoted as HPc1–HPc5) were detected among cabbage strains of P. carotovorum, while one new haplotype was identified for both P. versatile (HPv1) and P. odoriferum (HPo1). None of the TCS haplotype networks provided evidence of significant correlation between geographic origin and the determined haplotypes, i.e., the infection origin. However, as haplotype network results are affected by the availability of sequencing data in public databases for the used genes and the number of analyzed strains, these findings may also be influenced by small sample size.",
publisher = "Basel : MDPI",
journal = "Microorganisms - Basel",
title = "Phylogeographic Analysis of Soft-Rot-Causing Pectobacterium spp. Strains Obtained from Cabbage in Serbia",
number = "8",
pages = "2122",
volume = "11",
doi = "10.3390/microorganisms11082122"
}
Jelušić, A., Scortichini, M., Marković, S., Mitrović, P., Iličić, R., Stanković, S.,& Popović Milovanović, T.. (2023). Phylogeographic Analysis of Soft-Rot-Causing Pectobacterium spp. Strains Obtained from Cabbage in Serbia. in Microorganisms - Basel
Basel : MDPI., 11(8), 2122.
https://doi.org/10.3390/microorganisms11082122
Jelušić A, Scortichini M, Marković S, Mitrović P, Iličić R, Stanković S, Popović Milovanović T. Phylogeographic Analysis of Soft-Rot-Causing Pectobacterium spp. Strains Obtained from Cabbage in Serbia. in Microorganisms - Basel. 2023;11(8):2122.
doi:10.3390/microorganisms11082122 .
Jelušić, Aleksandra, Scortichini, Marco, Marković, Sanja, Mitrović, Petar, Iličić, Renata, Stanković, Slaviša, Popović Milovanović, Tatjana, "Phylogeographic Analysis of Soft-Rot-Causing Pectobacterium spp. Strains Obtained from Cabbage in Serbia" in Microorganisms - Basel, 11, no. 8 (2023):2122,
https://doi.org/10.3390/microorganisms11082122 . .