TY  - JOUR
AU  - Đalović, Ivica
AU  - Kundu, Sayanta
AU  - Bahuguna, Rajeev Nayan
AU  - Pareek, Ashwani
AU  - Raza, Ali
AU  - Singla-Pareek, Sneh L.
AU  - Prasad, Vara P.V.
AU  - Varshney, Rajeev K.
PY  - 2023
UR  - http://fiver.ifvcns.rs/handle/123456789/3736
AB  - Global mean temperature is increasing at a rapid pace due to the rapid emission of greenhouse gases majorly from anthropogenic practices and predicted to rise up to 1.5˚C above the pre-industrial level by the year 2050. The warming climate is affecting global crop production by altering biochemical, physiological, and metabolic processes resulting in poor growth, development, and reduced yield. Maize is susceptible to heat stress, particularly at the reproductive and early grain filling stages. Interestingly, heat stress impact on crops is closely regulated by associated environmental covariables such as humidity, vapor pressure deficit, soil moisture content, and solar radiation. Therefore, heat stress tolerance is considered as a complex trait, which requires multiple levels of regulations in plants. Exploring genetic diversity from landraces and wild accessions of maize is a promising approach to identify novel donors, traits, quantitative trait loci (QTLs), and genes, which can be introgressed into the elite cultivars. Indeed, genome wide association studies (GWAS) for mining of potential QTL(s) and dominant gene(s) is a major route of crop improvement. Conversely, mutation breeding is being utilized for generating variation in existing populations with narrow genetic background. Besides breeding approaches, augmented production of heat shock factors (HSFs) and heat shock proteins (HSPs) have been reported in transgenic maize to provide heat stress tolerance. Recent advancements in molecular techniques including clustered regularly interspaced short palindromic repeats (CRISPR) would expedite the process for developing thermotolerant maize genotypes.
PB  - Wiley
T2  - The Plant Genome
T1  - Maize and heat stress: Physiological, genetic, and molecular insights
SP  - e20378
DO  - 10.1002/tpg2.20378
ER  - 

@article{
author = "Đalović, Ivica and Kundu, Sayanta and Bahuguna, Rajeev Nayan and Pareek, Ashwani and Raza, Ali and Singla-Pareek, Sneh L. and Prasad, Vara P.V. and Varshney, Rajeev K.",
year = "2023",
abstract = "Global mean temperature is increasing at a rapid pace due to the rapid emission of greenhouse gases majorly from anthropogenic practices and predicted to rise up to 1.5˚C above the pre-industrial level by the year 2050. The warming climate is affecting global crop production by altering biochemical, physiological, and metabolic processes resulting in poor growth, development, and reduced yield. Maize is susceptible to heat stress, particularly at the reproductive and early grain filling stages. Interestingly, heat stress impact on crops is closely regulated by associated environmental covariables such as humidity, vapor pressure deficit, soil moisture content, and solar radiation. Therefore, heat stress tolerance is considered as a complex trait, which requires multiple levels of regulations in plants. Exploring genetic diversity from landraces and wild accessions of maize is a promising approach to identify novel donors, traits, quantitative trait loci (QTLs), and genes, which can be introgressed into the elite cultivars. Indeed, genome wide association studies (GWAS) for mining of potential QTL(s) and dominant gene(s) is a major route of crop improvement. Conversely, mutation breeding is being utilized for generating variation in existing populations with narrow genetic background. Besides breeding approaches, augmented production of heat shock factors (HSFs) and heat shock proteins (HSPs) have been reported in transgenic maize to provide heat stress tolerance. Recent advancements in molecular techniques including clustered regularly interspaced short palindromic repeats (CRISPR) would expedite the process for developing thermotolerant maize genotypes.",
publisher = "Wiley",
journal = "The Plant Genome",
title = "Maize and heat stress: Physiological, genetic, and molecular insights",
pages = "e20378",
doi = "10.1002/tpg2.20378"
}

Đalović, I., Kundu, S., Bahuguna, R. N., Pareek, A., Raza, A., Singla-Pareek, S. L., Prasad, V. P.V.,& Varshney, R. K.. (2023). Maize and heat stress: Physiological, genetic, and molecular insights. in The Plant Genome
Wiley., e20378.
https://doi.org/10.1002/tpg2.20378

Đalović I, Kundu S, Bahuguna RN, Pareek A, Raza A, Singla-Pareek SL, Prasad VP, Varshney RK. Maize and heat stress: Physiological, genetic, and molecular insights. in The Plant Genome. 2023;:e20378.
doi:10.1002/tpg2.20378 .

Đalović, Ivica, Kundu, Sayanta, Bahuguna, Rajeev Nayan, Pareek, Ashwani, Raza, Ali, Singla-Pareek, Sneh L., Prasad, Vara P.V., Varshney, Rajeev K., "Maize and heat stress: Physiological, genetic, and molecular insights" in The Plant Genome (2023):e20378,
https://doi.org/10.1002/tpg2.20378 . .

TY  - JOUR
AU  - Rasool, Bushra
AU  - Summuna, Baby
AU  - Đalović, Ivica
AU  - Shah, Tariq Ahmed
AU  - Sheikh, Parveez Ahmed
AU  - Gupta, Sachin
AU  - Tyagi, Sandhya
AU  - Bilal, Sierra
AU  - Varshney, Rajeev K.
AU  - Abidi, Ishfaq
AU  - Kumar, Jitendra
AU  - Penmetsa, Varma
AU  - Khanday, Imtiyaz
AU  - Kumar, Upendra
AU  - Sofi, Parvaze Ahmad
AU  - Khan, Mohd Anwar
AU  - Bhat, Mohd Ashraf
AU  - Wani, Fehim Jeelani
AU  - Thudi, Mahendar
AU  - Mir, Reyazul Rouf
PY  - 2023
UR  - http://fiver.ifvcns.rs/handle/123456789/3385
AB  - Fusarium wilt (FW) caused by the Fusarium oxysporum f. sp. ciceri is a devastating disease of chickpea (Cicer arietinum L.). To identify promising resistant genotypes and genomic loci for FW resistance, a core set of 179 genotypes of chickpea was tested for FW reactions at seedling and reproductive stages under field as well as controlled conditions in the greenhouse. Our results revealed that at seedling stage, most of the genotypes were found resistant whereas, at the reproductive stage majority of the genotypes were found susceptible. Genotyping using a 50K Axiom®Cicer SNP Array and trait data of FW together led to the identification of 26 significant (p≤E-05) marker-trait associations (MTAs) for FW resistance. Among 26 MTAs, 12 were identified using trait data recorded in the field (3 at seedling and 9 at reproductive stage) and 14 MTAs were identified using trait data recorded under controlled conditions in the greenhouse (6 at seedling and 8 at reproductive stage). The phenotypic variation explained by these MTAs varied from 11.75 to 15.86% with an average of 13.77%. Five MTAs were classified as major, explaining more than 15% phenotypic variation for FW and two MTAs were declared stable, being identified in either two environments or at two growth stages. One of the promising stable and major MTAs (Affx_123280060) detected in field conditions at reproductive stage was also detected in greenhouse conditions at seedling and reproductive stages. The stable and major (>15% PVE) MTAs can be used in chickpea breeding programmes.
PB  - The American Phytopathological Society (APS) Publications
T2  - Phytopathology
T1  - Delineating Marker-trait Associations for Fusarium Wilt in Chickpea using Axiom® Cicer SNP Array
DO  - 10.1094/PHYTO-05-22-0164-FI
DO  - 1943-7684
ER  - 

@article{
author = "Rasool, Bushra and Summuna, Baby and Đalović, Ivica and Shah, Tariq Ahmed and Sheikh, Parveez Ahmed and Gupta, Sachin and Tyagi, Sandhya and Bilal, Sierra and Varshney, Rajeev K. and Abidi, Ishfaq and Kumar, Jitendra and Penmetsa, Varma and Khanday, Imtiyaz and Kumar, Upendra and Sofi, Parvaze Ahmad and Khan, Mohd Anwar and Bhat, Mohd Ashraf and Wani, Fehim Jeelani and Thudi, Mahendar and Mir, Reyazul Rouf",
year = "2023",
abstract = "Fusarium wilt (FW) caused by the Fusarium oxysporum f. sp. ciceri is a devastating disease of chickpea (Cicer arietinum L.). To identify promising resistant genotypes and genomic loci for FW resistance, a core set of 179 genotypes of chickpea was tested for FW reactions at seedling and reproductive stages under field as well as controlled conditions in the greenhouse. Our results revealed that at seedling stage, most of the genotypes were found resistant whereas, at the reproductive stage majority of the genotypes were found susceptible. Genotyping using a 50K Axiom®Cicer SNP Array and trait data of FW together led to the identification of 26 significant (p≤E-05) marker-trait associations (MTAs) for FW resistance. Among 26 MTAs, 12 were identified using trait data recorded in the field (3 at seedling and 9 at reproductive stage) and 14 MTAs were identified using trait data recorded under controlled conditions in the greenhouse (6 at seedling and 8 at reproductive stage). The phenotypic variation explained by these MTAs varied from 11.75 to 15.86% with an average of 13.77%. Five MTAs were classified as major, explaining more than 15% phenotypic variation for FW and two MTAs were declared stable, being identified in either two environments or at two growth stages. One of the promising stable and major MTAs (Affx_123280060) detected in field conditions at reproductive stage was also detected in greenhouse conditions at seedling and reproductive stages. The stable and major (>15% PVE) MTAs can be used in chickpea breeding programmes.",
publisher = "The American Phytopathological Society (APS) Publications",
journal = "Phytopathology",
title = "Delineating Marker-trait Associations for Fusarium Wilt in Chickpea using Axiom® Cicer SNP Array",
doi = "10.1094/PHYTO-05-22-0164-FI, 1943-7684"
}

Rasool, B., Summuna, B., Đalović, I., Shah, T. A., Sheikh, P. A., Gupta, S., Tyagi, S., Bilal, S., Varshney, R. K., Abidi, I., Kumar, J., Penmetsa, V., Khanday, I., Kumar, U., Sofi, P. A., Khan, M. A., Bhat, M. A., Wani, F. J., Thudi, M.,& Mir, R. R.. (2023). Delineating Marker-trait Associations for Fusarium Wilt in Chickpea using Axiom® Cicer SNP Array. in Phytopathology
The American Phytopathological Society (APS) Publications..
https://doi.org/10.1094/PHYTO-05-22-0164-FI

Rasool B, Summuna B, Đalović I, Shah TA, Sheikh PA, Gupta S, Tyagi S, Bilal S, Varshney RK, Abidi I, Kumar J, Penmetsa V, Khanday I, Kumar U, Sofi PA, Khan MA, Bhat MA, Wani FJ, Thudi M, Mir RR. Delineating Marker-trait Associations for Fusarium Wilt in Chickpea using Axiom® Cicer SNP Array. in Phytopathology. 2023;.
doi:10.1094/PHYTO-05-22-0164-FI .

Rasool, Bushra, Summuna, Baby, Đalović, Ivica, Shah, Tariq Ahmed, Sheikh, Parveez Ahmed, Gupta, Sachin, Tyagi, Sandhya, Bilal, Sierra, Varshney, Rajeev K., Abidi, Ishfaq, Kumar, Jitendra, Penmetsa, Varma, Khanday, Imtiyaz, Kumar, Upendra, Sofi, Parvaze Ahmad, Khan, Mohd Anwar, Bhat, Mohd Ashraf, Wani, Fehim Jeelani, Thudi, Mahendar, Mir, Reyazul Rouf, "Delineating Marker-trait Associations for Fusarium Wilt in Chickpea using Axiom® Cicer SNP Array" in Phytopathology (2023),
https://doi.org/10.1094/PHYTO-05-22-0164-FI . .

TY  - JOUR
AU  - Saxena, Rachit
AU  - Obala, Jimmy
AU  - Sinjushin, Andrey
AU  - Kumar, C.V. Sameer
AU  - Saxena, K.B.
AU  - Varshney, Rajeev
PY  - 2017
UR  - http://fiver.ifvcns.rs/handle/123456789/3498
AB  - Pigeonpea (Cajanus cajan) is one of the most important legume crops grown in arid and semi-arid regions of the world. It is characterized with few unique features compared with other legume species, such as Lotus, Medicago, and Glycine. One of them is growth habit, an important agronomic trait. In the present study, identifcation of mutations affecting growth habit accompanied by a precise analysis of phenotype has been done which will shed more light upon developmental regulation in pigeonpea. A genetic study was conducted to examine the inheritance of growth habit and a genotyping by sequencing (GBS)-based genetic map constructed using F2 mapping population derived from crossing parents ICP 5529 and ICP 11605. Inheritance studies clearly demonstrated the dominance of indeterminate (IDT) growth habit over determinate (DT) growth habit in F2 and F2:3 progenies.
PB  - Springer
T2  - Theoretical and Applied Genetics
T1  - Characterization and mapping of Dt1 locus which co‑segregates with CcTFL1 for growth habit in pigeonpea
EP  - 1784
SP  - 1773
VL  - 130
DO  - 10.1007/s00122-017-2924-2
ER  - 

@article{
author = "Saxena, Rachit and Obala, Jimmy and Sinjushin, Andrey and Kumar, C.V. Sameer and Saxena, K.B. and Varshney, Rajeev",
year = "2017",
abstract = "Pigeonpea (Cajanus cajan) is one of the most important legume crops grown in arid and semi-arid regions of the world. It is characterized with few unique features compared with other legume species, such as Lotus, Medicago, and Glycine. One of them is growth habit, an important agronomic trait. In the present study, identifcation of mutations affecting growth habit accompanied by a precise analysis of phenotype has been done which will shed more light upon developmental regulation in pigeonpea. A genetic study was conducted to examine the inheritance of growth habit and a genotyping by sequencing (GBS)-based genetic map constructed using F2 mapping population derived from crossing parents ICP 5529 and ICP 11605. Inheritance studies clearly demonstrated the dominance of indeterminate (IDT) growth habit over determinate (DT) growth habit in F2 and F2:3 progenies.",
publisher = "Springer",
journal = "Theoretical and Applied Genetics",
title = "Characterization and mapping of Dt1 locus which co‑segregates with CcTFL1 for growth habit in pigeonpea",
pages = "1784-1773",
volume = "130",
doi = "10.1007/s00122-017-2924-2"
}

Saxena, R., Obala, J., Sinjushin, A., Kumar, C.V. S., Saxena, K.B.,& Varshney, R.. (2017). Characterization and mapping of Dt1 locus which co‑segregates with CcTFL1 for growth habit in pigeonpea. in Theoretical and Applied Genetics
Springer., 130, 1773-1784.
https://doi.org/10.1007/s00122-017-2924-2

Saxena R, Obala J, Sinjushin A, Kumar CS, Saxena K, Varshney R. Characterization and mapping of Dt1 locus which co‑segregates with CcTFL1 for growth habit in pigeonpea. in Theoretical and Applied Genetics. 2017;130:1773-1784.
doi:10.1007/s00122-017-2924-2 .

Saxena, Rachit, Obala, Jimmy, Sinjushin, Andrey, Kumar, C.V. Sameer, Saxena, K.B., Varshney, Rajeev, "Characterization and mapping of Dt1 locus which co‑segregates with CcTFL1 for growth habit in pigeonpea" in Theoretical and Applied Genetics, 130 (2017):1773-1784,
https://doi.org/10.1007/s00122-017-2924-2 . .