Structural and functional insights into the candidate genes associated with different developmental stages of flag leaf in bread wheat (Triticum aestivum L.)
Аутори
Mehla, SheetalKumar, Upendra
Kapoor, Prexha
Singh, Yogita
Sihag, Pooja
Sagwal, Vijeta
Balyan, Priyanka
Kumar, Anuj
Ahalawat, Navjeet
Lakra, Nita
Pal Singh, Krishna
Pešić, Vladan
Đalović, Ivica
Rouf Mir, Reyazul
Parkash Dhankher, Om
Чланак у часопису (Објављена верзија)
Метаподаци
Приказ свих података о документуАпстракт
Grain yield is one of the most important aims for combating the needs of the growing world population. The role of development and nutrient transfer in flag leaf for higher yields at the grain level is well known. It is a great challenge to properly exploit this knowledge because all the processes, starting from the emergence of the flag leaf to the grain filling stages of wheat (Triticum aestivum L.), are very complex biochemical and physiological processes to address. This study was conducted with the primary goal of functionally and structurally annotating the candidate genes associated with different developmental stages of flag leaf in a comprehensive manner using a plethora of in silico tools. Flag leaf-associated genes were analyzed for their structural and functional impacts using a set of bioinformatics tools and algorithms. The results revealed the association of 17 candidate genes with different stages of flag leaf development in wheat crop. Of these 17 candidate genes, the ...expression analysis results revealed the upregulation of genes such as TaSRT1-5D, TaPNH1-7B, and TaNfl1-2B and the downregulation of genes such as TaNAP1-7B, TaNOL-4D, and TaOsl2-2B can be utilized for the generation of high-yielding wheat varieties. Through MD simulation and other in silico analyses, all these proteins were found to be stable. Based on the outcome of bioinformatics and molecular analysis, the identified candidate genes were found to play principal roles in the flag leaf development process and can be utilized for higher-yield wheat production.
Кључне речи:
flag leaf development / homology modeling / gene expression analysis / qRT-PCR / quantitative real-time polymerase chain reaction / MD simulation / wheat / bread wheat / Triticum aestivumИзвор:
Frontiers in Genetics, 2022, 13, 933560-Издавач:
- Frontiers Media S.A.
Финансирање / пројекти:
- SPARC/2018-2019/P854/SL by SPARC, the Ministry of Education, GOI, in collaboration with the University of Massachusetts, Amherst
Колекције
Институција/група
FiVeRTY - JOUR AU - Mehla, Sheetal AU - Kumar, Upendra AU - Kapoor, Prexha AU - Singh, Yogita AU - Sihag, Pooja AU - Sagwal, Vijeta AU - Balyan, Priyanka AU - Kumar, Anuj AU - Ahalawat, Navjeet AU - Lakra, Nita AU - Pal Singh, Krishna AU - Pešić, Vladan AU - Đalović, Ivica AU - Rouf Mir, Reyazul AU - Parkash Dhankher, Om PY - 2022 UR - http://fiver.ifvcns.rs/handle/123456789/3078 AB - Grain yield is one of the most important aims for combating the needs of the growing world population. The role of development and nutrient transfer in flag leaf for higher yields at the grain level is well known. It is a great challenge to properly exploit this knowledge because all the processes, starting from the emergence of the flag leaf to the grain filling stages of wheat (Triticum aestivum L.), are very complex biochemical and physiological processes to address. This study was conducted with the primary goal of functionally and structurally annotating the candidate genes associated with different developmental stages of flag leaf in a comprehensive manner using a plethora of in silico tools. Flag leaf-associated genes were analyzed for their structural and functional impacts using a set of bioinformatics tools and algorithms. The results revealed the association of 17 candidate genes with different stages of flag leaf development in wheat crop. Of these 17 candidate genes, the expression analysis results revealed the upregulation of genes such as TaSRT1-5D, TaPNH1-7B, and TaNfl1-2B and the downregulation of genes such as TaNAP1-7B, TaNOL-4D, and TaOsl2-2B can be utilized for the generation of high-yielding wheat varieties. Through MD simulation and other in silico analyses, all these proteins were found to be stable. Based on the outcome of bioinformatics and molecular analysis, the identified candidate genes were found to play principal roles in the flag leaf development process and can be utilized for higher-yield wheat production. PB - Frontiers Media S.A. T2 - Frontiers in Genetics T1 - Structural and functional insights into the candidate genes associated with different developmental stages of flag leaf in bread wheat (Triticum aestivum L.) SP - 933560 VL - 13 DO - 10.3389/fgene.2022.933560 ER -
@article{ author = "Mehla, Sheetal and Kumar, Upendra and Kapoor, Prexha and Singh, Yogita and Sihag, Pooja and Sagwal, Vijeta and Balyan, Priyanka and Kumar, Anuj and Ahalawat, Navjeet and Lakra, Nita and Pal Singh, Krishna and Pešić, Vladan and Đalović, Ivica and Rouf Mir, Reyazul and Parkash Dhankher, Om", year = "2022", abstract = "Grain yield is one of the most important aims for combating the needs of the growing world population. The role of development and nutrient transfer in flag leaf for higher yields at the grain level is well known. It is a great challenge to properly exploit this knowledge because all the processes, starting from the emergence of the flag leaf to the grain filling stages of wheat (Triticum aestivum L.), are very complex biochemical and physiological processes to address. This study was conducted with the primary goal of functionally and structurally annotating the candidate genes associated with different developmental stages of flag leaf in a comprehensive manner using a plethora of in silico tools. Flag leaf-associated genes were analyzed for their structural and functional impacts using a set of bioinformatics tools and algorithms. The results revealed the association of 17 candidate genes with different stages of flag leaf development in wheat crop. Of these 17 candidate genes, the expression analysis results revealed the upregulation of genes such as TaSRT1-5D, TaPNH1-7B, and TaNfl1-2B and the downregulation of genes such as TaNAP1-7B, TaNOL-4D, and TaOsl2-2B can be utilized for the generation of high-yielding wheat varieties. Through MD simulation and other in silico analyses, all these proteins were found to be stable. Based on the outcome of bioinformatics and molecular analysis, the identified candidate genes were found to play principal roles in the flag leaf development process and can be utilized for higher-yield wheat production.", publisher = "Frontiers Media S.A.", journal = "Frontiers in Genetics", title = "Structural and functional insights into the candidate genes associated with different developmental stages of flag leaf in bread wheat (Triticum aestivum L.)", pages = "933560", volume = "13", doi = "10.3389/fgene.2022.933560" }
Mehla, S., Kumar, U., Kapoor, P., Singh, Y., Sihag, P., Sagwal, V., Balyan, P., Kumar, A., Ahalawat, N., Lakra, N., Pal Singh, K., Pešić, V., Đalović, I., Rouf Mir, R.,& Parkash Dhankher, O.. (2022). Structural and functional insights into the candidate genes associated with different developmental stages of flag leaf in bread wheat (Triticum aestivum L.). in Frontiers in Genetics Frontiers Media S.A.., 13, 933560. https://doi.org/10.3389/fgene.2022.933560
Mehla S, Kumar U, Kapoor P, Singh Y, Sihag P, Sagwal V, Balyan P, Kumar A, Ahalawat N, Lakra N, Pal Singh K, Pešić V, Đalović I, Rouf Mir R, Parkash Dhankher O. Structural and functional insights into the candidate genes associated with different developmental stages of flag leaf in bread wheat (Triticum aestivum L.). in Frontiers in Genetics. 2022;13:933560. doi:10.3389/fgene.2022.933560 .
Mehla, Sheetal, Kumar, Upendra, Kapoor, Prexha, Singh, Yogita, Sihag, Pooja, Sagwal, Vijeta, Balyan, Priyanka, Kumar, Anuj, Ahalawat, Navjeet, Lakra, Nita, Pal Singh, Krishna, Pešić, Vladan, Đalović, Ivica, Rouf Mir, Reyazul, Parkash Dhankher, Om, "Structural and functional insights into the candidate genes associated with different developmental stages of flag leaf in bread wheat (Triticum aestivum L.)" in Frontiers in Genetics, 13 (2022):933560, https://doi.org/10.3389/fgene.2022.933560 . .