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Molecular evaluation of genetic variability in tomato (Lycopersicon esculentum mill.) genotypes by microsatellite markers

Molekularna evaluacija genetičke varijabilnosti paradajza (Lycopersicon esculentum mill.) mikrosatelitskim markerima

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Authors
Glogovac, Svetlana
Takač, Adam
Brbaklić, Ljiljana
Trkulja, Dragana
Červenski, Janko
Gvozdanović-Varga, Jelica
Popović, Vukašin
Article (Published version)
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Abstract
The objective of this research was to assess genetic diversity using eight microsatellite markers in 30 tomato genotypes from the collection of the Institute of Field and Vegetable Crops in Novi Sad. The SSR markers were selected from publicly available data and Solanaceae Genome Network database. Genotypes were grouped into three clusters, using Ward's hierarchical clustering method and Euclidean distance measure. Markers SSR248, TMS9, TMS42 and SSR111 had very high PIC (Polymorphism information content) values and can be recommended for the future studies.
Paradajz (Lycopersicon esculentum Mill.) je jedna od povrtarskih vrsta najviše izučavanih na polju oplemenjivanja, genetike i genomike i jedna od 3000 iz familije Solanaceae (pomoćnice). Veličina genoma paradajza iznosi 950 Mbp, a sadrži 77% heterohromatina i 23% euhromatina (Peterson, Price, Johnston i Stack 1996). Iako je diverzitet njegovih prirodnih staništa veoma velik, znatan deo genetičke varijabilnosti paradajza je izgubljen u procesu domestifikacije i intenzivne veštačke selekcije. Cilj ovog istraživanja je procena genetičkog diverziteta 30 genotipova paradajza iz kolekcije Instituta za ratarstvo i povrtarstvo u Novom Sadu korišćenjem 8 mikrosatelitskih markera. SSR markeri su izabrani na osnovu objavljene naučne literature i Solanaceae Genome Network baze podataka. Markeri SSR 248, TMS 9, TMS 42 i SSR 111, kod kojih je utvrđena visoka PIC vrednost, mogu se preporučiti za buduća istraživanja.
Keywords:
genetic variability / genetics / Lycopersicon esculentum / microsatellites / SSR markers / tomatoes / genetička varijabilnost / genetika / Lycopersicon esculentum / mikrosateliti / paradajz / SSR markeri
Source:
Ratarstvo i povrtarstvo / Field and Vegetable Crops Research, 2013, 50, 3, 1-5
Publisher:
  • Institut za ratarstvo i povrtarstvo, Novi Sad
Funding / projects:
  • Development of vegetable cultivars and hybrids intended for outdoor and indoor production (RS-31030)

DOI: 10.5937/ratpov50-4344

ISSN: 1821-3944

[ Google Scholar ]
URI
http://fiver.ifvcns.rs/handle/123456789/1202
Collections
  • Radovi istraživača / Researchers' papers
Institution/Community
FiVeR
TY  - JOUR
AU  - Glogovac, Svetlana
AU  - Takač, Adam
AU  - Brbaklić, Ljiljana
AU  - Trkulja, Dragana
AU  - Červenski, Janko
AU  - Gvozdanović-Varga, Jelica
AU  - Popović, Vukašin
PY  - 2013
UR  - http://fiver.ifvcns.rs/handle/123456789/1202
AB  - The objective of this research was to assess genetic diversity using eight microsatellite markers in 30 tomato genotypes from the collection of the Institute of Field and Vegetable Crops in Novi Sad. The SSR markers were selected from publicly available data and Solanaceae Genome Network database. Genotypes were grouped into three clusters, using Ward's hierarchical clustering method and Euclidean distance measure. Markers SSR248, TMS9, TMS42 and SSR111 had very high PIC (Polymorphism information content) values and can be recommended for the future studies.
AB  - Paradajz (Lycopersicon esculentum Mill.) je jedna od povrtarskih vrsta najviše izučavanih na polju oplemenjivanja, genetike i genomike i jedna od 3000 iz familije Solanaceae (pomoćnice). Veličina genoma paradajza iznosi 950 Mbp, a sadrži 77% heterohromatina i 23% euhromatina (Peterson, Price, Johnston i Stack 1996). Iako je diverzitet njegovih prirodnih staništa veoma velik, znatan deo genetičke varijabilnosti paradajza je izgubljen u procesu domestifikacije i intenzivne veštačke selekcije. Cilj ovog istraživanja je procena genetičkog diverziteta 30 genotipova paradajza iz kolekcije Instituta za ratarstvo i povrtarstvo u Novom Sadu korišćenjem 8 mikrosatelitskih markera. SSR markeri su izabrani na osnovu objavljene naučne literature i Solanaceae Genome Network baze podataka. Markeri SSR 248, TMS 9, TMS 42 i SSR 111, kod kojih je utvrđena visoka PIC vrednost, mogu se preporučiti za buduća istraživanja.
PB  - Institut za ratarstvo i povrtarstvo, Novi Sad
T2  - Ratarstvo i povrtarstvo / Field and Vegetable Crops Research
T1  - Molecular evaluation of genetic variability in tomato (Lycopersicon esculentum mill.) genotypes by microsatellite markers
T1  - Molekularna evaluacija genetičke varijabilnosti paradajza (Lycopersicon esculentum mill.) mikrosatelitskim markerima
EP  - 5
IS  - 3
SP  - 1
VL  - 50
DO  - 10.5937/ratpov50-4344
UR  - conv_1809
ER  - 
@article{
author = "Glogovac, Svetlana and Takač, Adam and Brbaklić, Ljiljana and Trkulja, Dragana and Červenski, Janko and Gvozdanović-Varga, Jelica and Popović, Vukašin",
year = "2013",
abstract = "The objective of this research was to assess genetic diversity using eight microsatellite markers in 30 tomato genotypes from the collection of the Institute of Field and Vegetable Crops in Novi Sad. The SSR markers were selected from publicly available data and Solanaceae Genome Network database. Genotypes were grouped into three clusters, using Ward's hierarchical clustering method and Euclidean distance measure. Markers SSR248, TMS9, TMS42 and SSR111 had very high PIC (Polymorphism information content) values and can be recommended for the future studies., Paradajz (Lycopersicon esculentum Mill.) je jedna od povrtarskih vrsta najviše izučavanih na polju oplemenjivanja, genetike i genomike i jedna od 3000 iz familije Solanaceae (pomoćnice). Veličina genoma paradajza iznosi 950 Mbp, a sadrži 77% heterohromatina i 23% euhromatina (Peterson, Price, Johnston i Stack 1996). Iako je diverzitet njegovih prirodnih staništa veoma velik, znatan deo genetičke varijabilnosti paradajza je izgubljen u procesu domestifikacije i intenzivne veštačke selekcije. Cilj ovog istraživanja je procena genetičkog diverziteta 30 genotipova paradajza iz kolekcije Instituta za ratarstvo i povrtarstvo u Novom Sadu korišćenjem 8 mikrosatelitskih markera. SSR markeri su izabrani na osnovu objavljene naučne literature i Solanaceae Genome Network baze podataka. Markeri SSR 248, TMS 9, TMS 42 i SSR 111, kod kojih je utvrđena visoka PIC vrednost, mogu se preporučiti za buduća istraživanja.",
publisher = "Institut za ratarstvo i povrtarstvo, Novi Sad",
journal = "Ratarstvo i povrtarstvo / Field and Vegetable Crops Research",
title = "Molecular evaluation of genetic variability in tomato (Lycopersicon esculentum mill.) genotypes by microsatellite markers, Molekularna evaluacija genetičke varijabilnosti paradajza (Lycopersicon esculentum mill.) mikrosatelitskim markerima",
pages = "5-1",
number = "3",
volume = "50",
doi = "10.5937/ratpov50-4344",
url = "conv_1809"
}
Glogovac, S., Takač, A., Brbaklić, L., Trkulja, D., Červenski, J., Gvozdanović-Varga, J.,& Popović, V.. (2013). Molecular evaluation of genetic variability in tomato (Lycopersicon esculentum mill.) genotypes by microsatellite markers. in Ratarstvo i povrtarstvo / Field and Vegetable Crops Research
Institut za ratarstvo i povrtarstvo, Novi Sad., 50(3), 1-5.
https://doi.org/10.5937/ratpov50-4344
conv_1809
Glogovac S, Takač A, Brbaklić L, Trkulja D, Červenski J, Gvozdanović-Varga J, Popović V. Molecular evaluation of genetic variability in tomato (Lycopersicon esculentum mill.) genotypes by microsatellite markers. in Ratarstvo i povrtarstvo / Field and Vegetable Crops Research. 2013;50(3):1-5.
doi:10.5937/ratpov50-4344
conv_1809 .
Glogovac, Svetlana, Takač, Adam, Brbaklić, Ljiljana, Trkulja, Dragana, Červenski, Janko, Gvozdanović-Varga, Jelica, Popović, Vukašin, "Molecular evaluation of genetic variability in tomato (Lycopersicon esculentum mill.) genotypes by microsatellite markers" in Ratarstvo i povrtarstvo / Field and Vegetable Crops Research, 50, no. 3 (2013):1-5,
https://doi.org/10.5937/ratpov50-4344 .,
conv_1809 .

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