DNA isolation from dry samples of broomrape - the effect of isolation method and sample storage on DNA yield and quality
2012
Аутори
Dimitrijević, AleksandraPejović, Ivana
Imerovski, Ivana
Dedić, Boško
Pajević, Slobodanka
Miladinović, Dragana
Чланак у часопису (Објављена верзија)
Метаподаци
Приказ свих података о документуАпстракт
Accurate characterization of broomrape races is of a great importance for creation of sunflower hybrids resistant to this parasite. In molecular diversity studies, it is necessary to isolate sufficient quantity of good quality DNA. As collecting and transporting fresh broomrape tissue and seed samples for molecular analyses can be problematic, we have tested the possibility of DNA isolation from dry tissue of mature broomrape plants, with the aim to find optimal method for sample storage and isolation of sufficient quantity of DNA for multiple PCR reactions needed for diversity studies. Mid parts of dry broomrape stalks were collected and stored in four different ways. Ten DNA isolation protocols were tested and the obtained results compared. The best results regarding DNA yield and quality were obtained with dry samples stored at room temperature in ventilated space. DNA suitable for RAPD analysis was isolated with three of ten tested methods. As protocol of Somma (2006) is labour int...ensive and produced the lowest DNA yield, only DNA isolation with DNeasy (R) Plant Mini Kit, Qiagen and protocol by Rogers and Bendich (1985) could be recommended for future studies.
Кључне речи:
broomrape / DNA isolation / RAPD / dry samples / sample storageИзвор:
Romanian Agricultural Research, 2012, 30, 349-357Издавач:
- National Agricultural Research and Development Institute Fundulea.
Финансирање / пројекти:
- Развој нових сорти и побољшање технологија производње уљаних биљних врста за различите намене (RS-MESTD-Technological Development (TD or TR)-31025)
Колекције
Институција/група
FiVeRTY - JOUR AU - Dimitrijević, Aleksandra AU - Pejović, Ivana AU - Imerovski, Ivana AU - Dedić, Boško AU - Pajević, Slobodanka AU - Miladinović, Dragana PY - 2012 UR - http://fiver.ifvcns.rs/handle/123456789/1167 AB - Accurate characterization of broomrape races is of a great importance for creation of sunflower hybrids resistant to this parasite. In molecular diversity studies, it is necessary to isolate sufficient quantity of good quality DNA. As collecting and transporting fresh broomrape tissue and seed samples for molecular analyses can be problematic, we have tested the possibility of DNA isolation from dry tissue of mature broomrape plants, with the aim to find optimal method for sample storage and isolation of sufficient quantity of DNA for multiple PCR reactions needed for diversity studies. Mid parts of dry broomrape stalks were collected and stored in four different ways. Ten DNA isolation protocols were tested and the obtained results compared. The best results regarding DNA yield and quality were obtained with dry samples stored at room temperature in ventilated space. DNA suitable for RAPD analysis was isolated with three of ten tested methods. As protocol of Somma (2006) is labour intensive and produced the lowest DNA yield, only DNA isolation with DNeasy (R) Plant Mini Kit, Qiagen and protocol by Rogers and Bendich (1985) could be recommended for future studies. PB - National Agricultural Research and Development Institute Fundulea. T2 - Romanian Agricultural Research T1 - DNA isolation from dry samples of broomrape - the effect of isolation method and sample storage on DNA yield and quality EP - 357 IS - 30 SP - 349 UR - https://hdl.handle.net/21.15107/rcub_fiver_1167 ER -
@article{ author = "Dimitrijević, Aleksandra and Pejović, Ivana and Imerovski, Ivana and Dedić, Boško and Pajević, Slobodanka and Miladinović, Dragana", year = "2012", abstract = "Accurate characterization of broomrape races is of a great importance for creation of sunflower hybrids resistant to this parasite. In molecular diversity studies, it is necessary to isolate sufficient quantity of good quality DNA. As collecting and transporting fresh broomrape tissue and seed samples for molecular analyses can be problematic, we have tested the possibility of DNA isolation from dry tissue of mature broomrape plants, with the aim to find optimal method for sample storage and isolation of sufficient quantity of DNA for multiple PCR reactions needed for diversity studies. Mid parts of dry broomrape stalks were collected and stored in four different ways. Ten DNA isolation protocols were tested and the obtained results compared. The best results regarding DNA yield and quality were obtained with dry samples stored at room temperature in ventilated space. DNA suitable for RAPD analysis was isolated with three of ten tested methods. As protocol of Somma (2006) is labour intensive and produced the lowest DNA yield, only DNA isolation with DNeasy (R) Plant Mini Kit, Qiagen and protocol by Rogers and Bendich (1985) could be recommended for future studies.", publisher = "National Agricultural Research and Development Institute Fundulea.", journal = "Romanian Agricultural Research", title = "DNA isolation from dry samples of broomrape - the effect of isolation method and sample storage on DNA yield and quality", pages = "357-349", number = "30", url = "https://hdl.handle.net/21.15107/rcub_fiver_1167" }
Dimitrijević, A., Pejović, I., Imerovski, I., Dedić, B., Pajević, S.,& Miladinović, D.. (2012). DNA isolation from dry samples of broomrape - the effect of isolation method and sample storage on DNA yield and quality. in Romanian Agricultural Research National Agricultural Research and Development Institute Fundulea..(30), 349-357. https://hdl.handle.net/21.15107/rcub_fiver_1167
Dimitrijević A, Pejović I, Imerovski I, Dedić B, Pajević S, Miladinović D. DNA isolation from dry samples of broomrape - the effect of isolation method and sample storage on DNA yield and quality. in Romanian Agricultural Research. 2012;(30):349-357. https://hdl.handle.net/21.15107/rcub_fiver_1167 .
Dimitrijević, Aleksandra, Pejović, Ivana, Imerovski, Ivana, Dedić, Boško, Pajević, Slobodanka, Miladinović, Dragana, "DNA isolation from dry samples of broomrape - the effect of isolation method and sample storage on DNA yield and quality" in Romanian Agricultural Research, no. 30 (2012):349-357, https://hdl.handle.net/21.15107/rcub_fiver_1167 .