Bilateral project Slovenia - Bosnia and Herzegovina (ARRS-BI-BA/21-23-011)

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Bilateral project Slovenia - Bosnia and Herzegovina (ARRS-BI-BA/21-23-011)

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Publications

Genetic diversity of leafy kale genetic resources (Brassica oleracea var. acephala L.)

Umićević, Sonja; Antić, Marina; Rajković, Dragana; Sinkovič, Lovro; Nagl, Nevena; Goreta Ban, Smiljana; Meglič, Vladimir; Todorović, Vida; Marjanović-Jeromela, Ana; Pipan, Barbara

(Banja Luka : University of Banja Luka, Faculty of Agriculture, 2023)

TY  - JOUR
AU  - Umićević, Sonja
AU  - Antić, Marina
AU  - Rajković, Dragana
AU  - Sinkovič, Lovro
AU  - Nagl, Nevena
AU  - Goreta Ban, Smiljana
AU  - Meglič, Vladimir
AU  - Todorović, Vida
AU  - Marjanović-Jeromela, Ana
AU  - Pipan, Barbara
PY  - 2023
UR  - http://fiver.ifvcns.rs/handle/123456789/3784
AB  - Leafy kale (Brassica oleracea var. acephala L.) is one of the most
important Brassicaceae species with health-promoting properties and great
diversity. To investigate variability within and among accessions, 12 accessions
(each accession comprised four individuals/genotypes) from the Balkan region
were genotyped at 12 simple sequence repeats (SSRs) loci. The selected SSR
markers originated from the genomes of B. oleracea (eight), B. rapa (two) and
B. napus (two). DNA was extracted from seeds, cotyledons, shoots, and young
leaves, depending on the germination energy of each seed, using magnetic
extraction method. Genetic analysis included eight accessions from Serbia (24
genotypes), two accessions from Montenegro (eight genotypes), and one
accession from Bosnia and Herzegovina and Croatia (with four genotypes each).
Accession-specific polymorphism was found at the Ol12-FO2 and Ol10-F11a
loci, where genotypes were qualitatively distinguished by horizontal agarose gel
electrophoresis (binary detection). Among 12 loci, the average polymorphic
information content (PIC) was 0.71, with the marker Ol13-C12 proving to be the
78 Umićević et al.
most informative (PIC = 0.89). However, the analysis of molecular variability
(AMOVA) showed 11% diversity between accessions, 19% diversity between
genotypes, and 70% diversity within genotypes, explaining the molecular
diversity of native Balkan leafy kale germplasm. According to the genetic
structure, four genetic groups were formed with an average expected
heterozygosity of 0.70 between clusters. In order to exploit the genetic diversity,
it would be advisable to evaluate these accessions at phenotypic level and use
their potential in breeding programmes.
AB  - Raštan (Brassica oleracea var. acephala L.) je jedna od najvažnijih vrsta iz porodice kupusnjača koja povoljno utiče na zdravlje ljudi i odlikuje se velikom raznovrsnošću. Da bi se istražila varijabilnost unutar i između prinova, 12 prinova (svaka prinova se sastojala od četiri individue/genotipa) sa teritorije Balkanskog poluostrva je genotipizovano koristeći 12 SSR markera. Odabrani SSR markeri potiču iz genoma B. oleracea (osam), B. rapa (dva) i B. napus (dva). DNK je izolovana iz sjemena, kotiledona, izdanaka i mladih listova, u zavisnosti od energije klijanja svakog sjemena, metodom magnetne ekstrakcije. Genetičkom analizom obuhvaćeno je osam prinova iz Srbije (24 genotipa), dvije prinove iz Crne Gore (osam genotipova) i jedna prinova iz Bosne i Hercegovine i Hrvatske (sa po četiri genotipa). Polimorfizam specifičan za prinove pronađen je na lokusima Ol12-FO2 i Ol10-F11a, gdje su genotipovi kvalitativno razlikovani horizontalnom elektroforezom u agaroznom gelu (binarna detekcija). Kod ukupno 12 lokusa, prosječan sadržaj polimorfne informacije (PIC) bio je 0,71, pri čemu se kao najinformativniji pokazao marker Ol13-C12 (PIC = 0,89). Međutim, analiza molekularne varijabilnosti (AMOVA) pokazala je 11% raznovrsnosti između prinova, 19% raznovrsnosti između genotipova i 70% raznovrsnosti unutar genotipova, objašnjavajući molekularnu raznovrsnost izvorne germplazme raštana sa teritorije Balkanskog poluostrva. Prema genetičkoj strukturi formirane su četiri genetičke grupe sa prosječnom očekivanom heterozigotnošću od 0,70 između klastera. Da bi se iskoristio genetički diverzitet, bilo bi preporučljivo da se ove prinove karakterišu 90 Umićević et al. na fenotipskom nivou i da se njihov potencijal iskoristi u programima oplemenjivanja.
PB  - Banja Luka : University of Banja Luka, Faculty of Agriculture
T2  - Agroznanje / Agro-knowledge Journal
T1  - Genetic diversity of leafy kale genetic resources (Brassica oleracea var. acephala L.)
T1  - Genetički diverzitet genetičkih resursa raštana (Brassica oleracea var. acephala L.)
EP  - 90
IS  - 3
SP  - 77
VL  - 24
DO  - 10.7251/AGREN2303077U
ER  - 
@article{
author = "Umićević, Sonja and Antić, Marina and Rajković, Dragana and Sinkovič, Lovro and Nagl, Nevena and Goreta Ban, Smiljana and Meglič, Vladimir and Todorović, Vida and Marjanović-Jeromela, Ana and Pipan, Barbara",
year = "2023",
abstract = "Leafy kale (Brassica oleracea var. acephala L.) is one of the most
important Brassicaceae species with health-promoting properties and great
diversity. To investigate variability within and among accessions, 12 accessions
(each accession comprised four individuals/genotypes) from the Balkan region
were genotyped at 12 simple sequence repeats (SSRs) loci. The selected SSR
markers originated from the genomes of B. oleracea (eight), B. rapa (two) and
B. napus (two). DNA was extracted from seeds, cotyledons, shoots, and young
leaves, depending on the germination energy of each seed, using magnetic
extraction method. Genetic analysis included eight accessions from Serbia (24
genotypes), two accessions from Montenegro (eight genotypes), and one
accession from Bosnia and Herzegovina and Croatia (with four genotypes each).
Accession-specific polymorphism was found at the Ol12-FO2 and Ol10-F11a
loci, where genotypes were qualitatively distinguished by horizontal agarose gel
electrophoresis (binary detection). Among 12 loci, the average polymorphic
information content (PIC) was 0.71, with the marker Ol13-C12 proving to be the
78 Umićević et al.
most informative (PIC = 0.89). However, the analysis of molecular variability
(AMOVA) showed 11% diversity between accessions, 19% diversity between
genotypes, and 70% diversity within genotypes, explaining the molecular
diversity of native Balkan leafy kale germplasm. According to the genetic
structure, four genetic groups were formed with an average expected
heterozygosity of 0.70 between clusters. In order to exploit the genetic diversity,
it would be advisable to evaluate these accessions at phenotypic level and use
their potential in breeding programmes., Raštan (Brassica oleracea var. acephala L.) je jedna od najvažnijih vrsta iz porodice kupusnjača koja povoljno utiče na zdravlje ljudi i odlikuje se velikom raznovrsnošću. Da bi se istražila varijabilnost unutar i između prinova, 12 prinova (svaka prinova se sastojala od četiri individue/genotipa) sa teritorije Balkanskog poluostrva je genotipizovano koristeći 12 SSR markera. Odabrani SSR markeri potiču iz genoma B. oleracea (osam), B. rapa (dva) i B. napus (dva). DNK je izolovana iz sjemena, kotiledona, izdanaka i mladih listova, u zavisnosti od energije klijanja svakog sjemena, metodom magnetne ekstrakcije. Genetičkom analizom obuhvaćeno je osam prinova iz Srbije (24 genotipa), dvije prinove iz Crne Gore (osam genotipova) i jedna prinova iz Bosne i Hercegovine i Hrvatske (sa po četiri genotipa). Polimorfizam specifičan za prinove pronađen je na lokusima Ol12-FO2 i Ol10-F11a, gdje su genotipovi kvalitativno razlikovani horizontalnom elektroforezom u agaroznom gelu (binarna detekcija). Kod ukupno 12 lokusa, prosječan sadržaj polimorfne informacije (PIC) bio je 0,71, pri čemu se kao najinformativniji pokazao marker Ol13-C12 (PIC = 0,89). Međutim, analiza molekularne varijabilnosti (AMOVA) pokazala je 11% raznovrsnosti između prinova, 19% raznovrsnosti između genotipova i 70% raznovrsnosti unutar genotipova, objašnjavajući molekularnu raznovrsnost izvorne germplazme raštana sa teritorije Balkanskog poluostrva. Prema genetičkoj strukturi formirane su četiri genetičke grupe sa prosječnom očekivanom heterozigotnošću od 0,70 između klastera. Da bi se iskoristio genetički diverzitet, bilo bi preporučljivo da se ove prinove karakterišu 90 Umićević et al. na fenotipskom nivou i da se njihov potencijal iskoristi u programima oplemenjivanja.",
publisher = "Banja Luka : University of Banja Luka, Faculty of Agriculture",
journal = "Agroznanje / Agro-knowledge Journal",
title = "Genetic diversity of leafy kale genetic resources (Brassica oleracea var. acephala L.), Genetički diverzitet genetičkih resursa raštana (Brassica oleracea var. acephala L.)",
pages = "90-77",
number = "3",
volume = "24",
doi = "10.7251/AGREN2303077U"
}
Umićević, S., Antić, M., Rajković, D., Sinkovič, L., Nagl, N., Goreta Ban, S., Meglič, V., Todorović, V., Marjanović-Jeromela, A.,& Pipan, B.. (2023). Genetic diversity of leafy kale genetic resources (Brassica oleracea var. acephala L.). in Agroznanje / Agro-knowledge Journal
Banja Luka : University of Banja Luka, Faculty of Agriculture., 24(3), 77-90.
https://doi.org/10.7251/AGREN2303077U
Umićević S, Antić M, Rajković D, Sinkovič L, Nagl N, Goreta Ban S, Meglič V, Todorović V, Marjanović-Jeromela A, Pipan B. Genetic diversity of leafy kale genetic resources (Brassica oleracea var. acephala L.). in Agroznanje / Agro-knowledge Journal. 2023;24(3):77-90.
doi:10.7251/AGREN2303077U .
Umićević, Sonja, Antić, Marina, Rajković, Dragana, Sinkovič, Lovro, Nagl, Nevena, Goreta Ban, Smiljana, Meglič, Vladimir, Todorović, Vida, Marjanović-Jeromela, Ana, Pipan, Barbara, "Genetic diversity of leafy kale genetic resources (Brassica oleracea var. acephala L.)" in Agroznanje / Agro-knowledge Journal, 24, no. 3 (2023):77-90,
https://doi.org/10.7251/AGREN2303077U . .

Molecular characterization of leafy kale genetic resources (Brassica oleracea var. acephala L.)

Umićević, Sonja; Antić, Marina; Rajković, Dragana; Sinkovič, Lovro; Nagl, Nevena; Goreta Ban, Smiljana; Meglič, Vladimir; Todorović, Vida; Marjanović-Jeromela, Ana; Pipan, Barbara

(Banja Luka : University of Banja Luka, Faculty of Agriculture, 2023)

TY  - CONF
AU  - Umićević, Sonja
AU  - Antić, Marina
AU  - Rajković, Dragana
AU  - Sinkovič, Lovro
AU  - Nagl, Nevena
AU  - Goreta Ban, Smiljana
AU  - Meglič, Vladimir
AU  - Todorović, Vida
AU  - Marjanović-Jeromela, Ana
AU  - Pipan, Barbara
PY  - 2023
UR  - http://fiver.ifvcns.rs/handle/123456789/4260
AB  - Leafy kale (Brassica oleracea var. acephala L.) is one of the most important Brassicaceae species with health-promoting properties and high diversity. To investigate variability within and between accessions, 12 accessions (each accession comprised four individuals/genotypes) from the Balkan area was genotyped at 12 SSR (Simple Sequence Repeats) loci. DNA was extracted from seeds, cotyledons, shoots, or young leaves, depending on the germination energy of each seed, using the MagMax (Applied Biosystems) magnetic extraction method with the BioSprint Plant Kit (Qiagen).
PB  - Banja Luka : University of Banja Luka, Faculty of Agriculture
C3  - Book of Abstracts, 12th International Symposium on Agricultural Sciences "AgroReS 2023", 24-26 May 2023, Trebinje, Bosnia and Herzegovina
T1  - Molecular characterization of leafy kale genetic resources (Brassica oleracea var. acephala L.)
EP  - 189
SP  - 188
UR  - https://hdl.handle.net/21.15107/rcub_fiver_4260
ER  - 
@conference{
author = "Umićević, Sonja and Antić, Marina and Rajković, Dragana and Sinkovič, Lovro and Nagl, Nevena and Goreta Ban, Smiljana and Meglič, Vladimir and Todorović, Vida and Marjanović-Jeromela, Ana and Pipan, Barbara",
year = "2023",
abstract = "Leafy kale (Brassica oleracea var. acephala L.) is one of the most important Brassicaceae species with health-promoting properties and high diversity. To investigate variability within and between accessions, 12 accessions (each accession comprised four individuals/genotypes) from the Balkan area was genotyped at 12 SSR (Simple Sequence Repeats) loci. DNA was extracted from seeds, cotyledons, shoots, or young leaves, depending on the germination energy of each seed, using the MagMax (Applied Biosystems) magnetic extraction method with the BioSprint Plant Kit (Qiagen).",
publisher = "Banja Luka : University of Banja Luka, Faculty of Agriculture",
journal = "Book of Abstracts, 12th International Symposium on Agricultural Sciences "AgroReS 2023", 24-26 May 2023, Trebinje, Bosnia and Herzegovina",
title = "Molecular characterization of leafy kale genetic resources (Brassica oleracea var. acephala L.)",
pages = "189-188",
url = "https://hdl.handle.net/21.15107/rcub_fiver_4260"
}
Umićević, S., Antić, M., Rajković, D., Sinkovič, L., Nagl, N., Goreta Ban, S., Meglič, V., Todorović, V., Marjanović-Jeromela, A.,& Pipan, B.. (2023). Molecular characterization of leafy kale genetic resources (Brassica oleracea var. acephala L.). in Book of Abstracts, 12th International Symposium on Agricultural Sciences "AgroReS 2023", 24-26 May 2023, Trebinje, Bosnia and Herzegovina
Banja Luka : University of Banja Luka, Faculty of Agriculture., 188-189.
https://hdl.handle.net/21.15107/rcub_fiver_4260
Umićević S, Antić M, Rajković D, Sinkovič L, Nagl N, Goreta Ban S, Meglič V, Todorović V, Marjanović-Jeromela A, Pipan B. Molecular characterization of leafy kale genetic resources (Brassica oleracea var. acephala L.). in Book of Abstracts, 12th International Symposium on Agricultural Sciences "AgroReS 2023", 24-26 May 2023, Trebinje, Bosnia and Herzegovina. 2023;:188-189.
https://hdl.handle.net/21.15107/rcub_fiver_4260 .
Umićević, Sonja, Antić, Marina, Rajković, Dragana, Sinkovič, Lovro, Nagl, Nevena, Goreta Ban, Smiljana, Meglič, Vladimir, Todorović, Vida, Marjanović-Jeromela, Ana, Pipan, Barbara, "Molecular characterization of leafy kale genetic resources (Brassica oleracea var. acephala L.)" in Book of Abstracts, 12th International Symposium on Agricultural Sciences "AgroReS 2023", 24-26 May 2023, Trebinje, Bosnia and Herzegovina (2023):188-189,
https://hdl.handle.net/21.15107/rcub_fiver_4260 .