TY  - JOUR
AU  - Rasool, Bushra
AU  - Summuna, Baby
AU  - Đalović, Ivica
AU  - Shah, Tariq Ahmed
AU  - Sheikh, Parveez Ahmed
AU  - Gupta, Sachin
AU  - Tyagi, Sandhya
AU  - Bilal, Sierra
AU  - Varshney, Rajeev K.
AU  - Abidi, Ishfaq
AU  - Kumar, Jitendra
AU  - Penmetsa, Varma
AU  - Khanday, Imtiyaz
AU  - Kumar, Upendra
AU  - Sofi, Parvaze Ahmad
AU  - Khan, Mohd Anwar
AU  - Bhat, Mohd Ashraf
AU  - Wani, Fehim Jeelani
AU  - Thudi, Mahendar
AU  - Mir, Reyazul Rouf
PY  - 2023
UR  - http://fiver.ifvcns.rs/handle/123456789/3385
AB  - Fusarium wilt (FW) caused by the Fusarium oxysporum f. sp. ciceri is a devastating disease of chickpea (Cicer arietinum L.). To identify promising resistant genotypes and genomic loci for FW resistance, a core set of 179 genotypes of chickpea was tested for FW reactions at seedling and reproductive stages under field as well as controlled conditions in the greenhouse. Our results revealed that at seedling stage, most of the genotypes were found resistant whereas, at the reproductive stage majority of the genotypes were found susceptible. Genotyping using a 50K Axiom®Cicer SNP Array and trait data of FW together led to the identification of 26 significant (p≤E-05) marker-trait associations (MTAs) for FW resistance. Among 26 MTAs, 12 were identified using trait data recorded in the field (3 at seedling and 9 at reproductive stage) and 14 MTAs were identified using trait data recorded under controlled conditions in the greenhouse (6 at seedling and 8 at reproductive stage). The phenotypic variation explained by these MTAs varied from 11.75 to 15.86% with an average of 13.77%. Five MTAs were classified as major, explaining more than 15% phenotypic variation for FW and two MTAs were declared stable, being identified in either two environments or at two growth stages. One of the promising stable and major MTAs (Affx_123280060) detected in field conditions at reproductive stage was also detected in greenhouse conditions at seedling and reproductive stages. The stable and major (>15% PVE) MTAs can be used in chickpea breeding programmes.
PB  - The American Phytopathological Society (APS) Publications
T2  - Phytopathology
T1  - Delineating Marker-trait Associations for Fusarium Wilt in Chickpea using Axiom® Cicer SNP Array
DO  - 10.1094/PHYTO-05-22-0164-FI
DO  - 1943-7684
ER  - 

@article{
author = "Rasool, Bushra and Summuna, Baby and Đalović, Ivica and Shah, Tariq Ahmed and Sheikh, Parveez Ahmed and Gupta, Sachin and Tyagi, Sandhya and Bilal, Sierra and Varshney, Rajeev K. and Abidi, Ishfaq and Kumar, Jitendra and Penmetsa, Varma and Khanday, Imtiyaz and Kumar, Upendra and Sofi, Parvaze Ahmad and Khan, Mohd Anwar and Bhat, Mohd Ashraf and Wani, Fehim Jeelani and Thudi, Mahendar and Mir, Reyazul Rouf",
year = "2023",
abstract = "Fusarium wilt (FW) caused by the Fusarium oxysporum f. sp. ciceri is a devastating disease of chickpea (Cicer arietinum L.). To identify promising resistant genotypes and genomic loci for FW resistance, a core set of 179 genotypes of chickpea was tested for FW reactions at seedling and reproductive stages under field as well as controlled conditions in the greenhouse. Our results revealed that at seedling stage, most of the genotypes were found resistant whereas, at the reproductive stage majority of the genotypes were found susceptible. Genotyping using a 50K Axiom®Cicer SNP Array and trait data of FW together led to the identification of 26 significant (p≤E-05) marker-trait associations (MTAs) for FW resistance. Among 26 MTAs, 12 were identified using trait data recorded in the field (3 at seedling and 9 at reproductive stage) and 14 MTAs were identified using trait data recorded under controlled conditions in the greenhouse (6 at seedling and 8 at reproductive stage). The phenotypic variation explained by these MTAs varied from 11.75 to 15.86% with an average of 13.77%. Five MTAs were classified as major, explaining more than 15% phenotypic variation for FW and two MTAs were declared stable, being identified in either two environments or at two growth stages. One of the promising stable and major MTAs (Affx_123280060) detected in field conditions at reproductive stage was also detected in greenhouse conditions at seedling and reproductive stages. The stable and major (>15% PVE) MTAs can be used in chickpea breeding programmes.",
publisher = "The American Phytopathological Society (APS) Publications",
journal = "Phytopathology",
title = "Delineating Marker-trait Associations for Fusarium Wilt in Chickpea using Axiom® Cicer SNP Array",
doi = "10.1094/PHYTO-05-22-0164-FI, 1943-7684"
}

Rasool, B., Summuna, B., Đalović, I., Shah, T. A., Sheikh, P. A., Gupta, S., Tyagi, S., Bilal, S., Varshney, R. K., Abidi, I., Kumar, J., Penmetsa, V., Khanday, I., Kumar, U., Sofi, P. A., Khan, M. A., Bhat, M. A., Wani, F. J., Thudi, M.,& Mir, R. R.. (2023). Delineating Marker-trait Associations for Fusarium Wilt in Chickpea using Axiom® Cicer SNP Array. in Phytopathology
The American Phytopathological Society (APS) Publications..
https://doi.org/10.1094/PHYTO-05-22-0164-FI

Rasool B, Summuna B, Đalović I, Shah TA, Sheikh PA, Gupta S, Tyagi S, Bilal S, Varshney RK, Abidi I, Kumar J, Penmetsa V, Khanday I, Kumar U, Sofi PA, Khan MA, Bhat MA, Wani FJ, Thudi M, Mir RR. Delineating Marker-trait Associations for Fusarium Wilt in Chickpea using Axiom® Cicer SNP Array. in Phytopathology. 2023;.
doi:10.1094/PHYTO-05-22-0164-FI .

Rasool, Bushra, Summuna, Baby, Đalović, Ivica, Shah, Tariq Ahmed, Sheikh, Parveez Ahmed, Gupta, Sachin, Tyagi, Sandhya, Bilal, Sierra, Varshney, Rajeev K., Abidi, Ishfaq, Kumar, Jitendra, Penmetsa, Varma, Khanday, Imtiyaz, Kumar, Upendra, Sofi, Parvaze Ahmad, Khan, Mohd Anwar, Bhat, Mohd Ashraf, Wani, Fehim Jeelani, Thudi, Mahendar, Mir, Reyazul Rouf, "Delineating Marker-trait Associations for Fusarium Wilt in Chickpea using Axiom® Cicer SNP Array" in Phytopathology (2023),
https://doi.org/10.1094/PHYTO-05-22-0164-FI . .

TY  - CHAP
AU  - Gupta, Debjyoti Sen
AU  - Kumar, Jitendra
AU  - Barpate, Surendra
AU  - Parihar, A. K.
AU  - Chandra, Anup
AU  - Roy, Anirban
AU  - Đalović, Ivica
PY  - 2023
UR  - http://fiver.ifvcns.rs/handle/123456789/3976
AB  - Lentil is a highly consumed pulse crop in India, Bangladesh, Nepal, and many other countries. This crop is rich in nutrients which are easy to digest and palatable. In the form of a whole food source of nutrition, it can minimize the effect of malnutrition which is prevalent worldwide. Biofortification as a tool provides us great opportunity to further enhance nutrient content biologically. A few studies showed considerable genetic variability for nutrients including iron, zinc, calcium, magnesium, selenium, prebiotic carbohydrates, and folate concentration in lentil, which may be further improved. While breeding for nutrients, the role of environmental effects should be taken into consideration to provide a widely adapted plant variety. A number of genomic regions have been mapped using molecular markers; however, the intensity and coverage of the experiments were low, and this area needs more efforts to make marker-assisted breeding a reality in lentil breeding for nutritional traits. Lentil also has anti-nutrients like phytic acid, which influences the bioavailability of nutrients. In addition to traditional breeding approaches, efforts are underway to make use of cis- or transgenic technologies to enhance nutritional quality in many crops; the same may be adopted based on need in the case of lentil. Biofortified lentil varieties recently released which are rich in iron and zinc concentration; however, more varieties are required to cover different agroclimatic regions or niches. In short, more focused efforts are required to identify high-yielding, biotic and abiotic stress-tolerant, and nutrient-rich new-generation lentil varieties that will definitely boost health status among the consumers, especially from today’s perspective when plant-based protein or other nutrients are gaining huge popularity.
PB  - Springer Singapore
T2  - Compendium of Crop Genome Designing for Nutraceuticals
T1  - Lentils (Lens culinaris Medik): Nutritional Profile and Biofortification Prospects
EP  - 27
SP  - 1
DO  - 10.1007/978-981-19-3627-2_27-1
ER  - 

@inbook{
author = "Gupta, Debjyoti Sen and Kumar, Jitendra and Barpate, Surendra and Parihar, A. K. and Chandra, Anup and Roy, Anirban and Đalović, Ivica",
year = "2023",
abstract = "Lentil is a highly consumed pulse crop in India, Bangladesh, Nepal, and many other countries. This crop is rich in nutrients which are easy to digest and palatable. In the form of a whole food source of nutrition, it can minimize the effect of malnutrition which is prevalent worldwide. Biofortification as a tool provides us great opportunity to further enhance nutrient content biologically. A few studies showed considerable genetic variability for nutrients including iron, zinc, calcium, magnesium, selenium, prebiotic carbohydrates, and folate concentration in lentil, which may be further improved. While breeding for nutrients, the role of environmental effects should be taken into consideration to provide a widely adapted plant variety. A number of genomic regions have been mapped using molecular markers; however, the intensity and coverage of the experiments were low, and this area needs more efforts to make marker-assisted breeding a reality in lentil breeding for nutritional traits. Lentil also has anti-nutrients like phytic acid, which influences the bioavailability of nutrients. In addition to traditional breeding approaches, efforts are underway to make use of cis- or transgenic technologies to enhance nutritional quality in many crops; the same may be adopted based on need in the case of lentil. Biofortified lentil varieties recently released which are rich in iron and zinc concentration; however, more varieties are required to cover different agroclimatic regions or niches. In short, more focused efforts are required to identify high-yielding, biotic and abiotic stress-tolerant, and nutrient-rich new-generation lentil varieties that will definitely boost health status among the consumers, especially from today’s perspective when plant-based protein or other nutrients are gaining huge popularity.",
publisher = "Springer Singapore",
journal = "Compendium of Crop Genome Designing for Nutraceuticals",
booktitle = "Lentils (Lens culinaris Medik): Nutritional Profile and Biofortification Prospects",
pages = "27-1",
doi = "10.1007/978-981-19-3627-2_27-1"
}

Gupta, D. S., Kumar, J., Barpate, S., Parihar, A. K., Chandra, A., Roy, A.,& Đalović, I.. (2023). Lentils (Lens culinaris Medik): Nutritional Profile and Biofortification Prospects. in Compendium of Crop Genome Designing for Nutraceuticals
Springer Singapore., 1-27.
https://doi.org/10.1007/978-981-19-3627-2_27-1

Gupta DS, Kumar J, Barpate S, Parihar AK, Chandra A, Roy A, Đalović I. Lentils (Lens culinaris Medik): Nutritional Profile and Biofortification Prospects. in Compendium of Crop Genome Designing for Nutraceuticals. 2023;:1-27.
doi:10.1007/978-981-19-3627-2_27-1 .

Gupta, Debjyoti Sen, Kumar, Jitendra, Barpate, Surendra, Parihar, A. K., Chandra, Anup, Roy, Anirban, Đalović, Ivica, "Lentils (Lens culinaris Medik): Nutritional Profile and Biofortification Prospects" in Compendium of Crop Genome Designing for Nutraceuticals (2023):1-27,
https://doi.org/10.1007/978-981-19-3627-2_27-1 . .

TY  - JOUR
AU  - Kumar, Jitendra
AU  - Rouf Mir, Reyazul
AU  - Shafi, Safoora
AU  - Sen Gupta, Debjyoti
AU  - Đalović, Ivica
AU  - Miladinović, Jegor
AU  - Kumar, Rahul
AU  - Kumar, Sachin
AU  - Kumar, Rajeev
PY  - 2022
UR  - http://fiver.ifvcns.rs/handle/123456789/2656
AB  - Cool season grain legumes occupy an important place among the agricultural crops and
essentially provide multiple benefits including food supply, nutrition security, soil fertility improvement and revenue for farmers all over the world. However, owing to climate change, the average temperature is steadily rising, which negatively affects crop performance and limits their yield. Terminal heat stress that mainly occurred during grain development phases severely harms grain quality and weight in legumes adapted to the cool season, such as lentils, faba beans, chickpeas, field peas, etc. Although, traditional breeding approaches with advanced screening procedures have been employed to identify heat tolerant legume cultivars. Unfortunately, traditional breeding pipelines alone are no longer enough to meet global demands. Genomics-assisted interventions including new-generation sequencing technologies and genotyping platforms have facilitated the development of high-resolution molecular maps, QTL/gene discovery and marker-assisted introgression, thereby improving the efficiency in legumes breeding to develop stress-resilient varieties. Based on the current scenario, we attempted to review the intervention of genomics to decipher different components of tolerance to heat stress and future possibilities of using newly developed genomics-based interventions in cool season adapted grain legumes.
PB  - Basel : MDPI
T2  - International Journal of Molecular Sciences
T1  - Genomics associated interventions for heat stress tolerance in cool season adapted grain legumes
SP  - 399
VL  - 23
DO  - 10.3390/ijms23010399
ER  - 

@article{
author = "Kumar, Jitendra and Rouf Mir, Reyazul and Shafi, Safoora and Sen Gupta, Debjyoti and Đalović, Ivica and Miladinović, Jegor and Kumar, Rahul and Kumar, Sachin and Kumar, Rajeev",
year = "2022",
abstract = "Cool season grain legumes occupy an important place among the agricultural crops and
essentially provide multiple benefits including food supply, nutrition security, soil fertility improvement and revenue for farmers all over the world. However, owing to climate change, the average temperature is steadily rising, which negatively affects crop performance and limits their yield. Terminal heat stress that mainly occurred during grain development phases severely harms grain quality and weight in legumes adapted to the cool season, such as lentils, faba beans, chickpeas, field peas, etc. Although, traditional breeding approaches with advanced screening procedures have been employed to identify heat tolerant legume cultivars. Unfortunately, traditional breeding pipelines alone are no longer enough to meet global demands. Genomics-assisted interventions including new-generation sequencing technologies and genotyping platforms have facilitated the development of high-resolution molecular maps, QTL/gene discovery and marker-assisted introgression, thereby improving the efficiency in legumes breeding to develop stress-resilient varieties. Based on the current scenario, we attempted to review the intervention of genomics to decipher different components of tolerance to heat stress and future possibilities of using newly developed genomics-based interventions in cool season adapted grain legumes.",
publisher = "Basel : MDPI",
journal = "International Journal of Molecular Sciences",
title = "Genomics associated interventions for heat stress tolerance in cool season adapted grain legumes",
pages = "399",
volume = "23",
doi = "10.3390/ijms23010399"
}

Kumar, J., Rouf Mir, R., Shafi, S., Sen Gupta, D., Đalović, I., Miladinović, J., Kumar, R., Kumar, S.,& Kumar, R.. (2022). Genomics associated interventions for heat stress tolerance in cool season adapted grain legumes. in International Journal of Molecular Sciences
Basel : MDPI., 23, 399.
https://doi.org/10.3390/ijms23010399

Kumar J, Rouf Mir R, Shafi S, Sen Gupta D, Đalović I, Miladinović J, Kumar R, Kumar S, Kumar R. Genomics associated interventions for heat stress tolerance in cool season adapted grain legumes. in International Journal of Molecular Sciences. 2022;23:399.
doi:10.3390/ijms23010399 .

Kumar, Jitendra, Rouf Mir, Reyazul, Shafi, Safoora, Sen Gupta, Debjyoti, Đalović, Ivica, Miladinović, Jegor, Kumar, Rahul, Kumar, Sachin, Kumar, Rajeev, "Genomics associated interventions for heat stress tolerance in cool season adapted grain legumes" in International Journal of Molecular Sciences, 23 (2022):399,
https://doi.org/10.3390/ijms23010399 . .

TY  - CONF
AU  - Đalović, Ivica
AU  - Bekavac, Goran
AU  - Miladinović, Jegor
AU  - Kumar, Jitendra
AU  - Prasad, Vara
PY  - 2022
UR  - http://fiver.ifvcns.rs/handle/123456789/2798
AB  - Crop root systems directly interact with soil in capturing water and nutrients. Root system architecture and growth has important functional implications for the timing and extent of soil water and nutrient extraction, yet selection for root traits in breeding programs has been limited due to the labour-intensive and costly phenotyping methods for characterizing roots in field crops. The objectives of this research were to identify root traits in key cereals grain crops (maize, sorghum and wheat) that can be potentially employed as candidate traits conferring water stress tolerance. Genotypes within these crops has large variation in different root traits. Root traits such as total root length, root length at various depths, rooting depth, numbers and area of fine roots and nodal root angle. These traits have the potential to serve as functional parameters for plant breeding programs aimed at developing genotypes with improved resource use efficiency and adaptation to adverse environments (e.g., drought stress), enhancing overall crop productivity.
PB  - Banja Luka : University of Banja Luka, Faculty of Agriculture
C3  - Book of Abstracts, 11th International Symposium of Agricultural Sciences “AgroReS 2022", 26-28 May 2022, Trebinje, Bosnia and Herzegovina
T1  - Root trait variability in cereal grain crops: potential use in breeding programs to enhance adaptation to water stress
EP  - 64
SP  - 64
UR  - https://hdl.handle.net/21.15107/rcub_fiver_2798
ER  - 

@conference{
author = "Đalović, Ivica and Bekavac, Goran and Miladinović, Jegor and Kumar, Jitendra and Prasad, Vara",
year = "2022",
abstract = "Crop root systems directly interact with soil in capturing water and nutrients. Root system architecture and growth has important functional implications for the timing and extent of soil water and nutrient extraction, yet selection for root traits in breeding programs has been limited due to the labour-intensive and costly phenotyping methods for characterizing roots in field crops. The objectives of this research were to identify root traits in key cereals grain crops (maize, sorghum and wheat) that can be potentially employed as candidate traits conferring water stress tolerance. Genotypes within these crops has large variation in different root traits. Root traits such as total root length, root length at various depths, rooting depth, numbers and area of fine roots and nodal root angle. These traits have the potential to serve as functional parameters for plant breeding programs aimed at developing genotypes with improved resource use efficiency and adaptation to adverse environments (e.g., drought stress), enhancing overall crop productivity.",
publisher = "Banja Luka : University of Banja Luka, Faculty of Agriculture",
journal = "Book of Abstracts, 11th International Symposium of Agricultural Sciences “AgroReS 2022", 26-28 May 2022, Trebinje, Bosnia and Herzegovina",
title = "Root trait variability in cereal grain crops: potential use in breeding programs to enhance adaptation to water stress",
pages = "64-64",
url = "https://hdl.handle.net/21.15107/rcub_fiver_2798"
}

Đalović, I., Bekavac, G., Miladinović, J., Kumar, J.,& Prasad, V.. (2022). Root trait variability in cereal grain crops: potential use in breeding programs to enhance adaptation to water stress. in Book of Abstracts, 11th International Symposium of Agricultural Sciences “AgroReS 2022", 26-28 May 2022, Trebinje, Bosnia and Herzegovina
Banja Luka : University of Banja Luka, Faculty of Agriculture., 64-64.
https://hdl.handle.net/21.15107/rcub_fiver_2798

Đalović I, Bekavac G, Miladinović J, Kumar J, Prasad V. Root trait variability in cereal grain crops: potential use in breeding programs to enhance adaptation to water stress. in Book of Abstracts, 11th International Symposium of Agricultural Sciences “AgroReS 2022", 26-28 May 2022, Trebinje, Bosnia and Herzegovina. 2022;:64-64.
https://hdl.handle.net/21.15107/rcub_fiver_2798 .

Đalović, Ivica, Bekavac, Goran, Miladinović, Jegor, Kumar, Jitendra, Prasad, Vara, "Root trait variability in cereal grain crops: potential use in breeding programs to enhance adaptation to water stress" in Book of Abstracts, 11th International Symposium of Agricultural Sciences “AgroReS 2022", 26-28 May 2022, Trebinje, Bosnia and Herzegovina (2022):64-64,
https://hdl.handle.net/21.15107/rcub_fiver_2798 .

TY  - JOUR
AU  - Kumar, Jitendra
AU  - Sen Gupta, Debjyoti
AU  - Đalović, Ivica
AU  - Kumar, Shiv
AU  - Siddique, Kadambot H. M.
PY  - 2021
UR  - http://fiver.ifvcns.rs/handle/123456789/8
AB  - Root traits can be exploited to increase the physiological efficiency of crop water use under drought. Root length, root hairs, root branching, root diameter, and root proliferation rate are genetically defined traits that can help to improve the water productivity potential of crops. Recently, high-throughput phenotyping techniques/platforms have been used to screen the germplasm of major cool-season grain legumes for root traits and their impact on different physiological processes, including nutrient uptake and yield potential. Advances in omics approaches have led to the dissection of genomic, proteomic, and metabolomic structures of these traits. This knowledge facilitates breeders to improve the water productivity and nutrient uptake of cultivars under limited soil moisture conditions in major cool-season grain legumes that usually face terminal drought. This review discusses the advances in root traits and their potential for developing drought-tolerant cultivars in cool-season grain legumes.
PB  - Wiley, Hoboken
T2  - Physiologia Plantarum
T1  - Root-omics for drought tolerance in cool-season grain legumes
DO  - 10.1111/ppl.13313
ER  - 

@article{
author = "Kumar, Jitendra and Sen Gupta, Debjyoti and Đalović, Ivica and Kumar, Shiv and Siddique, Kadambot H. M.",
year = "2021",
abstract = "Root traits can be exploited to increase the physiological efficiency of crop water use under drought. Root length, root hairs, root branching, root diameter, and root proliferation rate are genetically defined traits that can help to improve the water productivity potential of crops. Recently, high-throughput phenotyping techniques/platforms have been used to screen the germplasm of major cool-season grain legumes for root traits and their impact on different physiological processes, including nutrient uptake and yield potential. Advances in omics approaches have led to the dissection of genomic, proteomic, and metabolomic structures of these traits. This knowledge facilitates breeders to improve the water productivity and nutrient uptake of cultivars under limited soil moisture conditions in major cool-season grain legumes that usually face terminal drought. This review discusses the advances in root traits and their potential for developing drought-tolerant cultivars in cool-season grain legumes.",
publisher = "Wiley, Hoboken",
journal = "Physiologia Plantarum",
title = "Root-omics for drought tolerance in cool-season grain legumes",
doi = "10.1111/ppl.13313"
}

Kumar, J., Sen Gupta, D., Đalović, I., Kumar, S.,& Siddique, K. H. M.. (2021). Root-omics for drought tolerance in cool-season grain legumes. in Physiologia Plantarum
Wiley, Hoboken..
https://doi.org/10.1111/ppl.13313

Kumar J, Sen Gupta D, Đalović I, Kumar S, Siddique KHM. Root-omics for drought tolerance in cool-season grain legumes. in Physiologia Plantarum. 2021;.
doi:10.1111/ppl.13313 .

Kumar, Jitendra, Sen Gupta, Debjyoti, Đalović, Ivica, Kumar, Shiv, Siddique, Kadambot H. M., "Root-omics for drought tolerance in cool-season grain legumes" in Physiologia Plantarum (2021),
https://doi.org/10.1111/ppl.13313 . .